Scaffold Ga0207905_1009071

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1009071
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1766
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018266	Metagenome / Metatranscriptome	236	N
F026154	Metagenome / Metatranscriptome	199	Y
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10090711	F054358	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSILLQKKGKLDNAIHVLEDKLEQWKKVRKWKNEISS
Ga0207905_10090714	F026154	AGGAG	MNGIISVVRFVTYTVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYQTKSKYIRLTKLKEEHEAYRKSR
Ga0207905_10090716	F018266	GAGG	MFRVILEGKFRENPINLSRAVKLLYNQDFTGSIRLENILWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVITIPSGSDKRELLVLNKIYGGNNG