NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207905_1007239

Scaffold Ga0207905_1007239


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1007239 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2024
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F021188Metagenome220N
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10072392F021188N/AMKTTEEIDIIWIPEEEAKHSLTIENAQGVNELVDLPASTVDRICKKKFGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV
Ga0207905_10072393F000720GAGGMTLQDDKIMRYEIPNRMMSTTFTLPIDNRKVIGIVNYTAGAEGIMPLAFWVKIKPTDSYIDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVNYFNKNVEEIISGLQPNKKQRMLSTDPYASQMKE
Ga0207905_10072394F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKDTNIQLYQFIEEHGNDITGR
Ga0207905_10072395F090883GGAGGMVTTALTMQRINNCRDMLTQAQCPRMQLMWKRNYEKLLKKYWEEQGERILRAAGKIH
Ga0207905_10072396F004988AGGVPKLIETICPRCDGNGYIRIPPVIAGIFDKATEADCPMCEEVITHMGMRITVHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.