Scaffold Ga0207905_1007209

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1007209
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2027
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10072092	F046006	GGAGG	VKEYLKPLAKYINFIWLLVIIHFCITVIVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHGNDFK
Ga0207905_10072093	F090883	GGAGG	MVTIAGKMKRINNCRDMLTKAICPRMQAMWKRNYEKLLKDYWEEAGERILKAAGKVH
Ga0207905_10072096	F004988	N/A	VPKLVETICPRCDGNGYIRISPVVATVGDSGTEADCTMCEEIITHMGQRISTHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
Ga0207905_10072097	F003020	AGGAG	MPDTSRFKSVSVSTSTHNQLESLAKTRFEVPVSIQKVIDFMLTNEMKKKKRAKAS