Scaffold Ga0207901_1015569

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1015569
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1052
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018940	Metagenome / Metatranscriptome	232	Y
F087313	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10155693	F087313	N/A	MSEHNNLNWTDFILCLSMELTFGDGSRDEKVYRKLENTMSRMEYIQAGEF
Ga0207901_10155694	F018940	AGGAG	MTEYENEDMDIHYENSGASMSEMQHQEDCDWIYSNCTCGLIETLDYNVEDNGDY