Metagenome Family F087313

Overview

Basic Information

• Family ID: F087313
• Family Type: Metagenome
• Number of Sequences: 110
• Average Sequence Length: 49 residues
• Representative Sequence: MSEHNNLNWTDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
• Number of Associated Samples: 70
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 85.32 %
• % of genes near scaffold ends (potentially truncated): 20.00 %
• % of genes from short scaffolds (< 2000 bps): 87.27 %
• Associated GOLD sequencing projects: 61
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (82.727 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (49.091 % of family members)
• Environment Ontology (ENVO): Unclassified (94.545 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (80.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 43.59%
  β-sheet: 0.00%
  Coil/Unstructured: 56.41%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF14791	DNA_pol_B_thumb	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
All Organisms	root	All Organisms	17.27 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
cellular organisms	root	All Organisms → cellular organisms	10.00 %
Viruses	superkingdom	All Organisms → Viruses	7.27 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.82 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.91 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.91 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.91 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Xanthomarina	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina	0.91 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.73 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Xanthomarina gelatinilytica	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	0.91 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001450|JGI24006J15134_10007448	All Organisms → cellular organisms → Bacteria	5539
3300001450|JGI24006J15134_10160668	Not Available	725
3300001450|JGI24006J15134_10177035	Not Available	672
3300001731|JGI24514J20073_1001510	Not Available	3998
3300002511|JGI25131J35506_1046500	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	601
3300002514|JGI25133J35611_10172484	Not Available	581
3300002519|JGI25130J35507_1067797	Not Available	678
3300002519|JGI25130J35507_1076959	Not Available	624
3300002760|JGI25136J39404_1000878	Not Available	4692
3300003690|PicViral_1003552	Not Available	4064
3300005398|Ga0066858_10049417	Not Available	1241
3300005423|Ga0066828_10128275	Not Available	865
3300005595|Ga0066833_10057116	Not Available	1092
3300005596|Ga0066834_10247927	Not Available	561
3300006310|Ga0068471_1003374	Not Available	829
3300006736|Ga0098033_1062635	All Organisms → Viruses → Predicted Viral	1082
3300006736|Ga0098033_1083255	Not Available	918
3300006736|Ga0098033_1112554	Not Available	771
3300006736|Ga0098033_1193315	Not Available	564
3300006738|Ga0098035_1252548	Not Available	580
3300006753|Ga0098039_1226535	Not Available	631
3300006753|Ga0098039_1293604	Not Available	544
3300006753|Ga0098039_1312136	Not Available	524
3300006754|Ga0098044_1007223	Not Available	5360
3300006902|Ga0066372_11015552	Not Available	505
3300006927|Ga0098034_1098134	Not Available	840
3300008216|Ga0114898_1104785	Not Available	843
3300008216|Ga0114898_1157597	Not Available	652
3300008216|Ga0114898_1172057	Not Available	615
3300008216|Ga0114898_1182885	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	590
3300008217|Ga0114899_1222529	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	591
3300008219|Ga0114905_1130978	Not Available	849
3300009109|Ga0117922_1109330	Not Available	1361
3300009173|Ga0114996_10169768	Not Available	1782
3300009173|Ga0114996_11199197	Not Available	531
3300009173|Ga0114996_11214825	Not Available	527
3300009409|Ga0114993_10726104	Not Available	722
3300009605|Ga0114906_1164554	Not Available	758
3300009619|Ga0105236_1021087	Not Available	758
3300009706|Ga0115002_10918278	Not Available	604
3300009706|Ga0115002_10918278	Not Available	604
3300010155|Ga0098047_10214242	Not Available	736
3300010155|Ga0098047_10251727	Not Available	671
3300017775|Ga0181432_1009740	Not Available	2320
3300017775|Ga0181432_1065807	Not Available	1038
3300017775|Ga0181432_1155761	Not Available	704
3300017775|Ga0181432_1215735	Not Available	602
3300017775|Ga0181432_1215735	Not Available	602
3300020435|Ga0211639_10472540	Not Available	515
3300020438|Ga0211576_10474590	Not Available	634
3300021084|Ga0206678_10309230	Not Available	759
3300021442|Ga0206685_10021296	Not Available	2057
3300021442|Ga0206685_10081534	Not Available	1060
3300021442|Ga0206685_10088151	All Organisms → Viruses → Predicted Viral	1019
3300021442|Ga0206685_10104765	Not Available	934
3300021442|Ga0206685_10343579	Not Available	509
3300021443|Ga0206681_10002824	Not Available	7321
3300021791|Ga0226832_10032180	All Organisms → Viruses → Predicted Viral	1759
3300021791|Ga0226832_10090716	All Organisms → Viruses → Predicted Viral	1105
3300021791|Ga0226832_10091094	All Organisms → Viruses → Predicted Viral	1103
3300021791|Ga0226832_10155878	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	870
3300022225|Ga0187833_10233839	Not Available	1057
3300022227|Ga0187827_10154413	Not Available	1613
3300022227|Ga0187827_10441586	Not Available	795
(restricted) 3300024518|Ga0255048_10088000	Not Available	1540
3300025045|Ga0207901_1015569	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1052
3300025045|Ga0207901_1023920	Not Available	834
3300025045|Ga0207901_1044161	Not Available	594
3300025052|Ga0207906_1033340	Not Available	706
3300025072|Ga0208920_1006557	Not Available	2699
3300025078|Ga0208668_1092124	Not Available	531
3300025082|Ga0208156_1039125	Not Available	988
3300025109|Ga0208553_1139809	Not Available	536
3300025112|Ga0209349_1004920	Not Available	5837
3300025112|Ga0209349_1190456	Not Available	529
3300025125|Ga0209644_1006554	Not Available	2356
3300025125|Ga0209644_1080986	Not Available	761
3300025168|Ga0209337_1006799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	7646
3300025264|Ga0208029_1074021	Not Available	659
3300025267|Ga0208179_1097495	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	584
3300025267|Ga0208179_1104474	Not Available	554
3300025270|Ga0208813_1060839	Not Available	813
3300025280|Ga0208449_1037166	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1385
3300025280|Ga0208449_1071785	Not Available	873
3300026117|Ga0208317_1008831	Not Available	591
3300026192|Ga0207986_1100456	Not Available	626
3300026192|Ga0207986_1104319	Not Available	610
3300026193|Ga0208129_1034955	Not Available	1124
3300026200|Ga0208894_1142612	Not Available	633
3300026211|Ga0208132_1108168	Not Available	626
3300026261|Ga0208524_1120351	Not Available	684
3300027838|Ga0209089_10448629	Not Available	706
3300027847|Ga0209402_10806471	Not Available	500
3300031775|Ga0315326_11032570	Not Available	500
3300031801|Ga0310121_10716496	Not Available	529
3300031803|Ga0310120_10019704	Not Available	4159
3300031803|Ga0310120_10309960	Not Available	830
3300031803|Ga0310120_10581755	Not Available	552
3300031811|Ga0310125_10243523	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	908
3300031861|Ga0315319_10363972	Not Available	727
3300031886|Ga0315318_10068768	All Organisms → Viruses → Predicted Viral	1922
3300031886|Ga0315318_10069672	Not Available	1910
3300032032|Ga0315327_10775490	Not Available	583
3300032130|Ga0315333_10207863	Not Available	928
3300032130|Ga0315333_10575553	Not Available	526
3300032278|Ga0310345_10329816	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1422
3300032360|Ga0315334_10187866	All Organisms → Viruses → Predicted Viral	1667
3300032360|Ga0315334_10222557	All Organisms → Viruses → Predicted Viral	1540
3300032360|Ga0315334_11548845	Not Available	567

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	71.82%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.45%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	4.55%
Strait	Environmental → Aquatic → Marine → Strait	4.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.82%
Inlet	Environmental → Aquatic → Marine → Inlet	0.91%
Coastal	Environmental → Aquatic → Marine → Coastal	0.91%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	70.91%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	15.45%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.55%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	3.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.82%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.91%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.91%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	0.91%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	49.09%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	15.45%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	11.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	4.55%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.55%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	3.64%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	3.64%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	1.82%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.82%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.91%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.91%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.91%
Marine, Hydrothermal Vent Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Marine, Hydrothermal Vent Plume	0.91%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001731	Marine viral communities from the Pacific Ocean - LP-37	Environmental
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental
3300002519	Marine viral communities from the Pacific Ocean - ETNP_2_300	Environmental
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental
3300003690	Hydrothermal vent plume microbial communities from the Mid Cayman Rise - Piccard2013-Plume - Viral/microbial metagenome assembly	Environmental
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental
3300005423	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV47	Environmental
3300005595	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B	Environmental
3300005596	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B	Environmental
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental
3300009109	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate b	Environmental
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental
3300009619	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250	Environmental
3300009706	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86	Environmental
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental
3300010883	western Arctic Ocean co-assembly	Environmental
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental
3300020435	Marine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)	Environmental
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental
3300021084	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015	Environmental
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental
3300021791	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer	Environmental
3300022225	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)	Environmental
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300025045	Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)	Environmental
3300025052	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)	Environmental
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental
3300025082	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)	Environmental
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental
3300025264	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)	Environmental
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental
3300025270	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)	Environmental
3300025280	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)	Environmental
3300026117	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 (SPAdes)	Environmental
3300026192	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89 (SPAdes)	Environmental
3300026193	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF47B (SPAdes)	Environmental
3300026200	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)	Environmental
3300026211	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199 (SPAdes)	Environmental
3300026261	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61 (SPAdes)	Environmental
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental
3300027847	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)	Environmental
3300031775	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315	Environmental
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental
3300031803	Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983	Environmental
3300031811	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8	Environmental
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental
3300032032	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315	Environmental
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_1000744811	3300001450	Marine	MSNQLKWTDFILCLGMELAFGDRPEKVYKKLENTMSRMEYITKGDF*
JGI24006J15134_101606682	3300001450	Marine	MSEHNNLNWTDFLLCLGMELAFGDGSRDKKVYRKLENIMSRIEYKEVK*
JGI24006J15134_101770354	3300001450	Marine	MSEHNNLNWTDFILCLGMELAFGDRPEKVYRKLENTLSRMEYITKGDF*
JGI24514J20073_10015102	3300001731	Marine	MSNHNNLNWTDFILCLSMELAFGDGSRDYKVYRKLENTLSRMEYIQCGE*
JGI25131J35506_10465001	3300002511	Marine	MSEHNNLNWKDFILCLSMELVFGDGSLDNEVYKTIENKMSRMEYY*
JGI25133J35611_101724842	3300002514	Marine	MSEHNNLNWXDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF*
JGI25130J35507_10677971	3300002519	Marine	MSEHNNLNWTDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF*
JGI25130J35507_10769592	3300002519	Marine	MSEHNNLNWKDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITGVK*
JGI25136J39404_10008781	3300002760	Marine	MSQHNNLNWKDFILCLSMELAFGDGSKDNEVYKTIENKMSRLEYYNKEVIA*
PicViral_100355212	3300003690	Marine, Hydrothermal Vent Plume	MSEHNNLNWKDFILCLSMELAFGDGSKDNEVYKTIENKMSRLEYYDINKEVVT*
Ga0066858_100494172	3300005398	Marine	MSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF*
Ga0066828_101282751	3300005423	Marine	KTIKMSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF*
Ga0066833_100571165	3300005595	Marine	MSEHNNLNWPDFILCLGMELAFGDGSRDDMVYRKLENTMSRMEYITGGD*
Ga0066834_102479274	3300005596	Marine	DFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF*
Ga0068471_10033742	3300006310	Marine	WKDFLLCLSMELTFGDGSRDAEVYKTIENKMSRMEYYK*
Ga0098033_10626353	3300006736	Marine	MSQHNNLNWPDFILCLGMELAFGDGSRDDVVYRKLENIMSRMEYY*
Ga0098033_10832555	3300006736	Marine	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRRIENIMSRMEYY*
Ga0098033_11125541	3300006736	Marine	MSEHNNLNWTDFVLCLSMELAFGDGTRDEKVYRKLENTMSRMEFIEQGVDF*
Ga0098033_11933151	3300006736	Marine	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRKIENTLSRMEYITAPKLKEVIA*
Ga0098035_12525482	3300006738	Marine	MSEHNNLNWKDFILCLSMELAFGDGSRDEAVYRKIENTMSRMEYITGEVKIKKEVIA*
Ga0098039_12265352	3300006753	Marine	MSEHNNLNWKDFILCLSMELTFGDGSRDEQVYRKLENTLSRMEYITNVAN*
Ga0098039_12936043	3300006753	Marine	MSEHNNLNWTDFVLCLGMELAFGDGTRDEKVYRKLENTLSRMENIQGGEF*
Ga0098039_13121362	3300006753	Marine	MSQHNNLNWKDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITGVK*
Ga0098044_100722312	3300006754	Marine	MSEHNNLNWTDFILCLSMELVFGDGTKDYKVYRKLENTLSRMEYITGGD*
Ga0066372_110155521	3300006902	Marine	MSEHNNLNWKDFILCLSMELTFGDGSRDEKVYRKLENTLSRMEYITGDK*
Ga0098034_10981341	3300006927	Marine	MSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIEN
Ga0114898_11047852	3300008216	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTLSRMEYITRGE*
Ga0114898_11575972	3300008216	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITRGD*
Ga0114898_11720571	3300008216	Deep Ocean	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRKIENTLSRIEYITAPKLKEVIA*
Ga0114898_11828852	3300008216	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTLSRMEYITGDK*
Ga0114899_12225292	3300008217	Deep Ocean	MSEHNPLNWKDFVLCLSMELTFGDGSRDEQVYRKLENTMSRMEYITKQS*
Ga0114905_11309781	3300008219	Deep Ocean	MSEHNNLNWTDFLLCLGMELTFGDGSRDKKVYRKLENIMSRIEYKEVNK*
Ga0117922_11093304	3300009109	Marine	NWTDFVLCLGMELAFGDGTRDYKVYRKIENTMSRMEFLKKGVDF*
Ga0114996_101697681	3300009173	Marine	MSEHNKNNWKDFLLCLGMELAFGDGSRDDTVYRTLENKMSRMEYYNKEVKA*
Ga0114996_111991971	3300009173	Marine	HNNLNWKDFLLCLGMELAFGDGSRDEAVYRTIENKMSRMEYY*
Ga0114996_112148251	3300009173	Marine	MESKMNKWTDFILSLGMELAFGDRPEKVYKKLENTMSRMEYIQEGDF*
Ga0114993_107261042	3300009409	Marine	MSEHNNLNWTDFILCLGMELAFVDESSPKVYRKLENTLSRMEYIMEGDF*
Ga0114906_11645543	3300009605	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITGVK*
Ga0105236_10210872	3300009619	Marine Oceanic	MSEHNHLNWTDFILCLGMELYFGDGSRDGQVYRKLENTLSRMEYITRGE*
Ga0115002_109182781	3300009706	Marine	MSEHNKNNWKDFLLCLGMELAFGDGSRDDTVYRTLENKMSRMEY
Ga0115002_109182783	3300009706	Marine	YRSKYKNMSEHNKNNWKDFLLCLGMELAFGDGSRDETVYRTLENKMSRMEYYNKEVKA*
Ga0098047_102142421	3300010155	Marine	MSEHNNLNWTDFILCLGMELTFGDGTRDYKVYRKIENTLSRMEYYNGT*
Ga0098047_102517271	3300010155	Marine	MSEHNNLNWKDFTLCLGMELAFGDGSRDEAVYRRLENIMSRMEYIQAGHPHPNSKEVKA*
Ga0133547_115128735	3300010883	Marine	DFLLCLGMELAFGDGSRDDTVYRTLENKMSRMEYYNKEVKA*
Ga0181432_10097404	3300017775	Seawater	MSQHNNLNWKDFLLCLGMELAFGDGSRDEQVYRKIENIMSRMEYY
Ga0181432_10658071	3300017775	Seawater	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRRIENIMSRLEYY
Ga0181432_11557612	3300017775	Seawater	MSEHNNLNWKDFTLCLGMELAFGDGSRDEAVYRRLENIMSRMEYIQAGHPHPNSKEVKE
Ga0181432_12157351	3300017775	Seawater	MSEHNNLNWTDFILCLSMELAFGDGTRDKKVYRKLENTMSRMENIQGGDF
Ga0181432_12157352	3300017775	Seawater	MSEHNNLNWTDFVLCLGMELAFGDGTRDEKVYRKLENT
Ga0211639_104725402	3300020435	Marine	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRKIENTLSRMEYITAPKLKEVIA
Ga0211576_104745902	3300020438	Marine	MSEHNNLNWTDFLLCLGMELAFGDGSRDKKVYRKLENIMSRIEYKEVK
Ga0206678_103092303	3300021084	Seawater	MSEHNNLNWTDFVLCLGMELAFGDGTRDYKVYRKIENTMSRMEFLERGVDF
Ga0206685_100212961	3300021442	Seawater	MSNHNNLNWKDFLLCLSMELAFGDGSRNEAVYRRLENIMSRMEYIQAGHPNPNLEIIK
Ga0206685_100815342	3300021442	Seawater	MSNHNNLNWTDFILCLSMELAFGDGSRDYKVYRKLENTLSRMEYIQCGE
Ga0206685_100881512	3300021442	Seawater	MSEHNNLNWKDFLLCLGMELAFGDGSRDEAVYRRIENIMSRMEYIQAGHPHPNKKEVIA
Ga0206685_101047653	3300021442	Seawater	MSEHNNLNWTDFILCLSMELAFGDGTRDKKVYRKIENTMSRMEFLKKGVDF
Ga0206685_103435791	3300021442	Seawater	MSNHNNLNWTDFILCLSMELAFGDGSRDQKVYRKLENTMSRMENIQRGEF
Ga0206681_1000282416	3300021443	Seawater	MSNHNSLNWKDFLLCLSMELTFGDGSRDAEVYKTIENKMSRMEYYK
Ga0226832_100321802	3300021791	Hydrothermal Vent Fluids	MSEHNNLNWTDFVLCLSMELAFGDGSRDEKVYRKLENTMSRMENITGGEF
Ga0226832_100907161	3300021791	Hydrothermal Vent Fluids	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITRGD
Ga0226832_100910944	3300021791	Hydrothermal Vent Fluids	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTLSRMEYITGVK
Ga0226832_101558782	3300021791	Hydrothermal Vent Fluids	LIEENLKMSEHNNLNWKDFILCLSMEIAWGDGSRDEQVYRKIENTLSRMEYIQRGEF
Ga0187833_102338394	3300022225	Seawater	MSEHNNLNWTDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0187827_101544133	3300022227	Seawater	MSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0187827_104415861	3300022227	Seawater	DFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
(restricted) Ga0255048_100880002	3300024518	Seawater	MIKLHWTDFLLSLGMELAFGDGSKDKQVYRKLENLLSRMEYY
Ga0207901_10155693	3300025045	Marine	MSEHNNLNWTDFILCLSMELTFGDGSRDEKVYRKLENTMSRMEYIQAGEF
Ga0207901_10239202	3300025045	Marine	MSEHNNLNWTDFILCLSMELTFGDGTRDEIVYRKLE
Ga0207901_10441611	3300025045	Marine	MSEHNNLNWTDFILCLSMELVFGDGSRDEKVYRKLENTLSRMEYIQKGEF
Ga0207906_10333402	3300025052	Marine	MSEHNNLNWTDFILCLSMELAFGDGSRDYKVYRKLENTLSRMEYIQQGG
Ga0208920_10065579	3300025072	Marine	MSEHNNLNWPDFILCLGMELAFGDGSRDDMVYRKLENTMSRMEYITGGD
Ga0208668_10921242	3300025078	Marine	MSEHNNLNWKDFILCLGMELYFGDGSRDEQVYRKLENTMSRMEYITGVK
Ga0208156_10391252	3300025082	Marine	MSQHNNLNWPDFILCLGMELAFGDGSRDDVVYRKLENIMSRMEYY
Ga0208553_11398092	3300025109	Marine	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRRIENIMSRMEYY
Ga0209349_10049203	3300025112	Marine	MSEHNNLNWTDFILCLSMELVFGDGTKDYKVYRKLENTLSRMEYITGGD
Ga0209349_11904561	3300025112	Marine	MSEHNNLNWKDFVLCLGMELAFGDGSRDDAVYRKIENTLSRMEYITAPKLKEVI
Ga0209644_10065543	3300025125	Marine	MSEHNNLNWKDFILCLSMELVFGDGSLDNEVYKTIENKMSRMEYY
Ga0209644_10809861	3300025125	Marine	MSQHNNLNWKDFILCLSMELAFGDGSKDNEVYKTIENKMSRLEYYNKEVIA
Ga0209337_10067996	3300025168	Marine	MSNQLKWTDFILCLGMELAFGDRPEKVYKKLENTMSRMEYITKGDF
Ga0208029_10740213	3300025264	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTLSRMEYITRGE
Ga0208179_10974952	3300025267	Deep Ocean	MSEHNHLNWTDFILCLGMELYFGDGSRDEQVYRKLENTLSRMEYITGDK
Ga0208179_11044742	3300025267	Deep Ocean	MSEHNNLNWKDFILCLGMELAFGDGSRDEAVYRKIENTLSRIEYITAPKLKEVIA
Ga0208813_10608391	3300025270	Deep Ocean	MSEHNNLNWKDFILCLSMELTFGDGSRDEKVYRKLENTMSRMENITGGEF
Ga0208449_10371664	3300025280	Deep Ocean	MSNHNNLNWKDFILCLSMELAFGDGSKDEQVYKTIENKMSRMEYFNGVES
Ga0208449_10717851	3300025280	Deep Ocean	MSEHNNLNWTDFILCLSMELTFGDGSRDEKVYRKLENTMSRMENITGGEF
Ga0208317_10088311	3300026117	Marine Oceanic	MSEHNNLNWKDFILCLSMELAFGDGSKDEQVYRTIENKMSRMEYFNGGK
Ga0207986_11004561	3300026192	Marine	LNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0207986_11043192	3300026192	Marine	MSEHNNLNWTDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYI
Ga0208129_10349554	3300026193	Marine	KTIKMSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0208894_11426121	3300026200	Marine	HNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0208132_11081681	3300026211	Marine	LNWTDFILCLGMELAFGDGSRDEKVYRKIENTMSRMEYIQNGEF
Ga0208524_11203511	3300026261	Marine	MSEHNNLNWSDFILCLGMELAFGDGSRDEKVYRKIENT
Ga0209089_104486292	3300027838	Marine	MSEHNNLNWTDFILCLGMELAFVDESSPKVYRKLENTLSRMEYIMEGDF
Ga0209402_108064711	3300027847	Marine	MSEHNKNNWKDFLLCLGMELAFGDGSRDDTVYRTLENKMSRMEYYNKEVKA
Ga0315326_110325701	3300031775	Seawater	MSEHNNLNWTDFLLCLGMELAFGDGSRDKKVYRKLENVMSRIEYKEVK
Ga0310121_107164962	3300031801	Marine	MSEHNNLNWKDFILCLSMELAFGDGSKDDEVYRTIENKMSRMEYFNIGPKINGGE
Ga0310120_1001970412	3300031803	Marine	HNNLNWKDFILCLSMELAFGDGSKDDEVYRTIENKMSRMEYFNIGPKINGGE
Ga0310120_103099602	3300031803	Marine	MSEHNNLNWKDFILCLSMELAFGDGSKDDEVYRTIENKMSRMEYFNADPKINGGD
Ga0310120_105817552	3300031803	Marine	MSNHNNLNWKDFILCLSMELAFGDGSKDAEVYKTIENKMSRIEYYGGE
Ga0310125_102435233	3300031811	Marine	SEHNNLNWTDFILCLSMELAFGDGTRDEKVYRKLENTMSRMEYISRGEF
Ga0315319_103639723	3300031861	Seawater	MSEHNNLNWKDFTLCLGMELAFGDGSRDEAVYRRLENIMSRMEYIQAGHPNPKLEIIK
Ga0315318_100687686	3300031886	Seawater	MSEHNNLNWTDFVLCLGMELAFGDGTRDEKVYRKLENTMSRMEYITGGEF
Ga0315318_100696725	3300031886	Seawater	MSEHNNLNWKDFTLCLGMELAFGDGSRDEAVYRRLENIMSRMEYIQAGHPNPNLEIIK
Ga0315327_107754901	3300032032	Seawater	MIKLHWTDFLLSLGMELAFGDGSKDKQVYRKLENILSRMEYY
Ga0315333_102078631	3300032130	Seawater	MSNHNNLNWTDFILCLSMELAFGDGTRDKKVYRKLENTMSRMENIQGGDF
Ga0315333_105755531	3300032130	Seawater	MSEHNNLNWTDFVLCLGMELAFGDGTRDYKVYRKIENTMSRMEFLKKGVDF
Ga0310345_103298161	3300032278	Seawater	MSEHNNLNWKDFILCLSMELAFGDGSLDKEVYKTIENKMSRMEYFNADPKLNGGVKA
Ga0315334_101878666	3300032360	Seawater	RKTIKMSEHNNLNWTDFVLCLGMELAFGDGTRDEKVYRKLENTMSRMEYITGGEF
Ga0315334_102225572	3300032360	Seawater	MSEHNNLNWTDFVLCLGMELAFGDGSRDQKVYRKIENTMSRMEYIMAGDF
Ga0315334_115488451	3300032360	Seawater	MSEHNHLNWTDFILCLGMELYFGDGSKDYLVYRKLENTLSRMEYIQKGEF