NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207891_1017147

Scaffold Ga0207891_1017147


Overview

Basic Information
Taxon OID3300025044 Open in IMG/M
Scaffold IDGa0207891_1017147 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9998Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072757Metagenome / Metatranscriptome121Y
F087760Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0207891_10171473F072757GAGGMKNSLIKIHMPIDDPYIMGKIPEAKVKVNTCIDKVKSIRYLVDESINQLEELKEELHKL
Ga0207891_10171474F087760AGGAGMKETEILQRNVRDLQGQLQNSHIRIKKLRAKLMQNEKLLTMLRKKP

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