Scaffold Ga0207900_104896

Overview

Basic Information

• Taxon OID: 3300025029
• Scaffold ID: Ga0207900_104896
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-39 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1222
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0005
  • Long. (^o): -144.9958

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F021181	Metagenome / Metatranscriptome	220	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207900_1048962	F019555	GGA	MFRIILKNKFKERKIDLSIAVKVMYHQKFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWIQLVKIFREGKPSIRVITTPTSSGLRELLVYKQLYGEEVQNEQKRQKKLEQFRNKQKNMQTSNIAPNME
Ga0207900_1048963	F068133	AGGAG	MQLAIDVFTDMMTNKEIYIIIGACIIMWIALERMDR
Ga0207900_1048964	F021181	AGGA	MRWLILIQLLAGFVLAFLGVIIMFHLYEVWLGLGITLVGFYAVIRAVHRSQNATSN