Scaffold Ga0210038_1066553

Overview

Basic Information

• Taxon OID: 3300025007
• Scaffold ID: Ga0210038_1066553
• Source Dataset Name: Groundwater microbial communities from aquifer - Crystal Geyser CG15_big_fil_post_rev_8/21/14_0.20 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured archaeal virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah: Grand County
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019951	Metagenome / Metatranscriptome	226	N
F026802	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210038_10665532	F026802	N/A	MYYYVPFSRNLTQGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLRGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWYQPAFIPLDHDIRANHQVLLETFTWGANFISVRGHFVYS
Ga0210038_10665533	F019951	N/A	ILFKAFQINVSANNVKCEANNKLHVQKGQTIILHAIQIAPGIDTADENVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGPNARTIHGVYMYEITS