Scaffold Ga0256337_1160543

Overview

Basic Information

• Taxon OID: 3300024573
• Scaffold ID: Ga0256337_1160543
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 558
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011938	Metagenome / Metatranscriptome	285	Y
F013891	Metagenome / Metatranscriptome	267	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256337_11605431	F013891	N/A	KKRVHEIPKPAMLLMDIVKYPDFLALRLYEDNFIQFDGTKKERVIDYVTKVKKLIESYGVRCELEGVPSARVL
Ga0256337_11605432	F011938	AGGGGG	VREYYDIIHIVFIHSENCYGTVEKLGAFASLVKYNIDGYEVEELLENEDFTIVDEIVHQHIEESN
Ga0256337_11605433	F080048	GAGG	MEKILCYSCNKSKNKLDVKKSSLLPINLLMCESCINSKFEPRWVVILAGRSS