NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255049_10000901

Scaffold Ga0255049_10000901


Overview

Basic Information
Taxon OID3300024517 Open in IMG/M
Scaffold IDGa0255049_10000901 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)17213
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010647Metagenome / Metatranscriptome301Y
F072757Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0255049_1000090114F072757N/AMPIDDAYIMGKIPEVKAKVSLCIDRVKTIRYLCEESIAGLEELKEELAKL
Ga0255049_1000090129F010647N/AMTKGKGYITYDKTKSDKPIDYGDPFKSDCIGPLESRADLNNWGYDMLKFPDPIKGKKT

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