Scaffold Ga0255059_10000466

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255059_10000466

Scaffold Ga0255059_10000466

Overview

Basic Information
Taxon OID	3300024486 Open in IMG/M
Scaffold ID	Ga0255059_10000466 Open in IMG/M
Source Dataset Name	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9354
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (20.83%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255059_1000046615	F075545	AGAAG	MIQLVINTSLLREIDERKLINAYARFMYNDEKDTTDDVQIKENLRQLLDWDENGDNGLGIYCSNFEEIKRKDWEFLINFIKENHHEIKSISFYPAKERKLESIKVVNDAIEAKERHNEERFTSENYEVSGRGKKARPCIYEGREYKSRQECMYKEGLTKYQIWKYLKDTNQI
Ga0255059_1000046619	F079361	N/A	MIYFTIAKNDCGYLIDSISECYEVLKYKFPDEKIYKSDKPIVSIYVIKDQLDEV

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