Scaffold Ga0255059_10000078

Overview

Basic Information

• Taxon OID: 3300024486
• Scaffold ID: Ga0255059_10000078
• Source Dataset Name: Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17167
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (94.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F065312	Metagenome / Metatranscriptome	127	Y
F086398	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255059_1000007816	F012184	AGGAG	MTNVEILNTILSIPGAQMGRQNKTNFVVVPADDGYVKIAVTAALAKDTKNHKAFNAEAAIAEYKAYEAEVALREAEKASKPAKVKGPNPEAQARRDAIDNAIGALPSFAEYTATDILNALAGQVPENTTVMAVGQSAKRLVEKGVLTVGTREGDKKSYYTKG
Ga0255059_1000007823	F065312	AGGAGG	MSKKKQPKQKSWVEVFQSERKQFPQGYCVTRIIPDKRNKKPKYKGREFDE
Ga0255059_1000007825	F086398	AGGAGG	MENMTYHCEVQRAERVKHIIKEIGVGQIIKEKYIQFRVGDAGRYICLTDTGITIIKSEDKQKIITMYVTTQRELVSVFGGTKKIPPYLRKKVDYNQSKFTERGKTIWKN