Scaffold Ga0209986_10006785

Overview

Basic Information

• Taxon OID: 3300024433
• Scaffold ID: Ga0209986_10006785
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9217
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004043	Metagenome / Metatranscriptome	456	Y
F053649	Metagenome / Metatranscriptome	141	N
F099208	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209986_1000678513	F004043	N/A	MGQREMGRHRSSEEEREVSTLREKQRLEEEVSKMRP
Ga0209986_100067853	F053649	AGG	MTYIVIKHTNYEGITPSVSIEDNEVYDLETAQAVKKVCELKNTNKDTTFHLLNVAYANLGKQDSNIEVVKSDDNFDYNQDKQLSWAF
Ga0209986_100067854	F099208	N/A	MGILVDLKKEEFIGQGFSKKEARTKAQEWCATTNTCRGCSQVVRSGWWSWKQGYCKDCID