Scaffold Ga0196962_10009861

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10009861
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2885
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023050	Metagenome	211	Y
F079686	Metagenome	115	Y
F090345	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_100098611	F090345	N/A	RKVEVEMIYKRAGNHWKRPPRFDRRQTDQEEESQPLWETGRPQCLKDIVKAKPRRRAPWK
Ga0196962_100098612	F079686	GGAGG	MQGGRCPECGLTADGPGRMVLIDDGTPAEGFPDDPEERCERCGRPLWCVIRIVYDDAEGGGVKL
Ga0196962_100098614	F023050	AGG	MRRLKRAALKDLGSFELLDGTIYHFDCLETHEELFLYGYDALLGDANKWPEPPEVYRKICEARDPAAALELFKPENPWSAFIDPAALFDTDALVNERRLVPISYEPPEDLSE