Scaffold Ga0196962_10002066

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10002066
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6565
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043687	Metagenome / Metatranscriptome	156	Y
F055487	Metagenome	138	N
F074494	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_1000206610	F074494	AGGAG	LIDAVTQQRPCQVRSRTQSPCLHQAVVEIRGIPFCEACAREQEAYFAIGELTQEETRDLRGEPLSKSLGETLGEMLDGMRRQRTVDLAAAKRLDLPRVDKPGSLRLRKARQSQPENRQNRGRRANGVEQLSEDAQVLIRAAREIHVERHGAKTFLPGTRLSFLEAAKRTGIRSDRQRYYD
Ga0196962_100020666	F043687	AGGCGG	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0196962_100020669	F055487	GAG	MASDDFRPRSGSMAEYADKGESMAEQIPEAWIGQEVTVYFGLEGYRQPGILESVSERGIVVQSGQGGAEEHVFWYPHTSVLRLMRGKPRGAEVRSF