Metagenome / Metatranscriptome Family F043687

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F043687
Family Type	Metagenome / Metatranscriptome
Number of Sequences	156
Average Sequence Length	60 residues
Representative Sequence	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQERR
Number of Associated Samples	59
Number of Associated Scaffolds	156

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.19 %
% of genes near scaffold ends (potentially truncated)	26.92 %
% of genes from short scaffolds (< 2000 bps)	79.49 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (71.795 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (51.282 % of family members)
Environment Ontology (ENVO)	Unclassified (51.282 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.744 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 156 Family Scaffolds
PF00781	DAGK_cat	3.85
PF13560	HTH_31	2.56
PF03729	DUF308	1.92
PF01595	CNNM	1.92
PF03471	CorC_HlyC	1.28
PF00313	CSD	1.28
PF07366	SnoaL	0.64
PF11387	DUF2795	0.64
PF12697	Abhydrolase_6	0.64
PF00487	FA_desaturase	0.64
PF06475	Glycolipid_bind	0.64
PF13546	DDE_5	0.64
PF12728	HTH_17	0.64
PF09335	SNARE_assoc	0.64
PF02080	TrkA_C	0.64
PF05598	DUF772	0.64
PF00353	HemolysinCabind	0.64
PF09557	DUF2382	0.64
PF05532	CsbD	0.64

COG ID	Name	Functional Category	% Frequency in 156 Family Scaffolds
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	7.69
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.92
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.64
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.64
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.64
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.64
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.64
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.64
COG3554	Uncharacterized conserved protein	Function unknown [S]	0.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
All Organisms	root	All Organisms	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
cellular organisms	root	All Organisms → cellular organisms	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	22.44 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	22.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	22.44 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	10.26 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1.92 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	1.28 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.79 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	10.26 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1.28 %
Rubrobacter xylanophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	0.64 %
Rubrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	0.64 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.64 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10595642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	697	Open in IMG/M
3300000858\|JGI10213J12805_10783659	Not Available	621	Open in IMG/M
3300001431\|F14TB_100797740	Not Available	602	Open in IMG/M
3300004016\|Ga0058689_10175437	Not Available	510	Open in IMG/M
3300004463\|Ga0063356_103660222	Not Available	662	Open in IMG/M
3300005562\|Ga0058697_10012265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	2862	Open in IMG/M
3300005562\|Ga0058697_10168949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	969	Open in IMG/M
3300006876\|Ga0079217_10312547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	878	Open in IMG/M
3300006876\|Ga0079217_10409685	Not Available	804	Open in IMG/M
3300006876\|Ga0079217_10847538	Not Available	643	Open in IMG/M
3300006894\|Ga0079215_10101638	Not Available	1267	Open in IMG/M
3300006894\|Ga0079215_10900027	Not Available	634	Open in IMG/M
3300006894\|Ga0079215_10969072	Not Available	620	Open in IMG/M
3300006918\|Ga0079216_10024652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2323	Open in IMG/M
3300006918\|Ga0079216_11011517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300007004\|Ga0079218_11652631	Not Available	706	Open in IMG/M
3300007790\|Ga0105679_10545818	Not Available	1377	Open in IMG/M
3300009789\|Ga0126307_10066508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2832	Open in IMG/M
3300009789\|Ga0126307_10094681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2362	Open in IMG/M
3300009789\|Ga0126307_10189380	Not Available	1650	Open in IMG/M
3300009789\|Ga0126307_10205414	Not Available	1580	Open in IMG/M
3300009789\|Ga0126307_10266837	Not Available	1376	Open in IMG/M
3300009789\|Ga0126307_10430506	Not Available	1064	Open in IMG/M
3300009789\|Ga0126307_10479273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300009789\|Ga0126307_10500858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	980	Open in IMG/M
3300009789\|Ga0126307_10643720	Not Available	855	Open in IMG/M
3300009789\|Ga0126307_10784014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	769	Open in IMG/M
3300009789\|Ga0126307_10840577	Not Available	741	Open in IMG/M
3300009789\|Ga0126307_11340083	Not Available	580	Open in IMG/M
3300009789\|Ga0126307_11353214	Not Available	577	Open in IMG/M
3300009789\|Ga0126307_11728753	Not Available	509	Open in IMG/M
3300009840\|Ga0126313_10204096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1518	Open in IMG/M
3300009840\|Ga0126313_10287011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1284	Open in IMG/M
3300009840\|Ga0126313_10486889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	986	Open in IMG/M
3300009840\|Ga0126313_10536565	Not Available	939	Open in IMG/M
3300009840\|Ga0126313_10634828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	862	Open in IMG/M
3300009840\|Ga0126313_10726311	Not Available	805	Open in IMG/M
3300009840\|Ga0126313_10948766	Not Available	703	Open in IMG/M
3300010036\|Ga0126305_10093466	Not Available	1794	Open in IMG/M
3300010036\|Ga0126305_10131739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1538	Open in IMG/M
3300010036\|Ga0126305_10354254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	961	Open in IMG/M
3300010036\|Ga0126305_10595567	Not Available	743	Open in IMG/M
3300010036\|Ga0126305_11251082	Not Available	513	Open in IMG/M
3300010037\|Ga0126304_10515421	Not Available	803	Open in IMG/M
3300010037\|Ga0126304_10563584	Not Available	767	Open in IMG/M
3300010037\|Ga0126304_10683868	Not Available	693	Open in IMG/M
3300010038\|Ga0126315_10020380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	3318	Open in IMG/M
3300010038\|Ga0126315_10051361	Not Available	2239	Open in IMG/M
3300010038\|Ga0126315_10074431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1900	Open in IMG/M
3300010038\|Ga0126315_10439101	Not Available	825	Open in IMG/M
3300010038\|Ga0126315_10716004	Not Available	654	Open in IMG/M
3300010039\|Ga0126309_10032240	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300010039\|Ga0126309_10048215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2026	Open in IMG/M
3300010039\|Ga0126309_10093798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1532	Open in IMG/M
3300010039\|Ga0126309_10112213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1420	Open in IMG/M
3300010039\|Ga0126309_10141732	Not Available	1283	Open in IMG/M
3300010039\|Ga0126309_10445918	Not Available	785	Open in IMG/M
3300010039\|Ga0126309_10507967	Not Available	743	Open in IMG/M
3300010039\|Ga0126309_10968081	Not Available	569	Open in IMG/M
3300010040\|Ga0126308_10088900	Not Available	1873	Open in IMG/M
3300010040\|Ga0126308_10220522	Not Available	1225	Open in IMG/M
3300010040\|Ga0126308_10315792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1029	Open in IMG/M
3300010040\|Ga0126308_10493210	Not Available	827	Open in IMG/M
3300010040\|Ga0126308_10700799	Not Available	696	Open in IMG/M
3300010040\|Ga0126308_10828583	Not Available	642	Open in IMG/M
3300010040\|Ga0126308_10957957	Not Available	598	Open in IMG/M
3300010041\|Ga0126312_10221583	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300010041\|Ga0126312_10531840	Not Available	842	Open in IMG/M
3300010041\|Ga0126312_10591284	Not Available	797	Open in IMG/M
3300010041\|Ga0126312_10701037	Not Available	731	Open in IMG/M
3300010041\|Ga0126312_11142905	Not Available	573	Open in IMG/M
3300010042\|Ga0126314_10120536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1803	Open in IMG/M
3300010042\|Ga0126314_10305105	Not Available	1137	Open in IMG/M
3300010042\|Ga0126314_10636068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	780	Open in IMG/M
3300010042\|Ga0126314_10678450	Not Available	754	Open in IMG/M
3300010042\|Ga0126314_10900996	Not Available	654	Open in IMG/M
3300010042\|Ga0126314_10951300	Not Available	636	Open in IMG/M
3300010044\|Ga0126310_10069607	Not Available	2031	Open in IMG/M
3300010044\|Ga0126310_11052203	Not Available	644	Open in IMG/M
3300010045\|Ga0126311_11153637	Not Available	639	Open in IMG/M
3300010045\|Ga0126311_11869865	Not Available	510	Open in IMG/M
3300010166\|Ga0126306_10188635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1551	Open in IMG/M
3300010166\|Ga0126306_10800427	Not Available	760	Open in IMG/M
3300010166\|Ga0126306_10822991	Not Available	750	Open in IMG/M
3300010166\|Ga0126306_11077664	Not Available	657	Open in IMG/M
3300012093\|Ga0136632_10203594	Not Available	902	Open in IMG/M
3300012186\|Ga0136620_10346386	Not Available	639	Open in IMG/M
3300012678\|Ga0136615_10133750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1176	Open in IMG/M
3300012939\|Ga0162650_100016668	Not Available	1019	Open in IMG/M
3300014488\|Ga0182001_10428570	Not Available	585	Open in IMG/M
3300014497\|Ga0182008_10922232	Not Available	515	Open in IMG/M
3300018432\|Ga0190275_10601724	Not Available	1147	Open in IMG/M
3300018432\|Ga0190275_10645678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1111	Open in IMG/M
3300018432\|Ga0190275_11501402	Not Available	751	Open in IMG/M
3300018432\|Ga0190275_12354606	Not Available	611	Open in IMG/M
3300018465\|Ga0190269_10217894	Not Available	1048	Open in IMG/M
3300018466\|Ga0190268_10024460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2032	Open in IMG/M
3300018466\|Ga0190268_10309614	Not Available	954	Open in IMG/M
3300018466\|Ga0190268_11146557	Not Available	638	Open in IMG/M
3300018466\|Ga0190268_11905810	Not Available	541	Open in IMG/M
3300018469\|Ga0190270_10761300	Not Available	969	Open in IMG/M
3300018469\|Ga0190270_11618644	Not Available	700	Open in IMG/M
3300018476\|Ga0190274_10134988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	2047	Open in IMG/M
3300018476\|Ga0190274_10723921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1043	Open in IMG/M
3300019377\|Ga0190264_10316639	Not Available	956	Open in IMG/M
3300019767\|Ga0190267_10352894	Not Available	794	Open in IMG/M
3300024430\|Ga0196962_10002066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	6565	Open in IMG/M
3300027639\|Ga0209387_1072617	Not Available	798	Open in IMG/M
3300027691\|Ga0209485_1101884	Not Available	810	Open in IMG/M
3300028578\|Ga0272482_10022532	Not Available	1590	Open in IMG/M
3300028754\|Ga0307297_10066496	Not Available	1138	Open in IMG/M
3300030496\|Ga0268240_10041534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300030496\|Ga0268240_10054000	Not Available	867	Open in IMG/M
3300030510\|Ga0268243_1053992	Not Available	874	Open in IMG/M
3300031091\|Ga0308201_10199397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	660	Open in IMG/M
3300031092\|Ga0308204_10243412	All Organisms → cellular organisms → Bacteria → Terrabacteria group	580	Open in IMG/M
3300031548\|Ga0307408_101578333	Not Available	623	Open in IMG/M
3300031548\|Ga0307408_102171801	Not Available	536	Open in IMG/M
3300031824\|Ga0307413_10111432	Not Available	1832	Open in IMG/M
3300031852\|Ga0307410_10891238	Not Available	762	Open in IMG/M
3300031901\|Ga0307406_11410839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	611	Open in IMG/M
3300031995\|Ga0307409_101143567	Not Available	801	Open in IMG/M
3300031995\|Ga0307409_101537835	Not Available	693	Open in IMG/M
3300031995\|Ga0307409_101773345	Not Available	646	Open in IMG/M
3300031995\|Ga0307409_102778689	Not Available	517	Open in IMG/M
3300032002\|Ga0307416_100134461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2234	Open in IMG/M
3300032004\|Ga0307414_12110802	Not Available	526	Open in IMG/M
3300032005\|Ga0307411_10849014	Not Available	808	Open in IMG/M
3300032080\|Ga0326721_10783148	Not Available	596	Open in IMG/M
3300032126\|Ga0307415_100421894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1145	Open in IMG/M
3300032126\|Ga0307415_100897623	Not Available	817	Open in IMG/M
3300032126\|Ga0307415_101332523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	681	Open in IMG/M
3300032126\|Ga0307415_102282648	Not Available	531	Open in IMG/M
3300032159\|Ga0268251_10170630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	834	Open in IMG/M
3300033989\|Ga0334924_038616	Not Available	611	Open in IMG/M
3300034132\|Ga0334915_005692	All Organisms → cellular organisms → Bacteria	2134	Open in IMG/M
3300034376\|Ga0334923_088593	Not Available	641	Open in IMG/M
3300034391\|Ga0334917_044083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	795	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.97%
Host-Associated	Host-Associated	16.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.05%
Plants	Host-Associated → Plants	16.03%
Aquatic	Environmental → Aquatic	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.90%
Phylloplane	Host-Associated → Plants → Phylloplane	3.85%
Freshwater	Environmental → Aquatic → Freshwater	1.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.64%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.85%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	2.56%
Ice	Environmental → Aquatic → Freshwater → Ice	1.92%
Sand	Environmental → Terrestrial → Soil → Sand	1.28%
Loam	Environmental → Terrestrial → Soil → Loam	0.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.64%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	67.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.69%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.28%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.28%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.64%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.64%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.64%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	51.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	10.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.69%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	2.56%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.28%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.64%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.64%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.64%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.64%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033989	Biocrust microbial communities from Mojave Desert, California, United States - 20HNC	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034376	Biocrust microbial communities from Mojave Desert, California, United States - 19HNC	Environmental	Open in IMG/M
3300034391	Biocrust microbial communities from Mojave Desert, California, United States - 13HMC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_105956421	3300000858	Soil	MAQGTLKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWA
JGI10213J12805_107836591	3300000858	Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR*
F14TB_1007977402	3300001431	Soil	MAQGTVKDNVRDELDEAAGYRKEAPHRKEATPEEVRQPGSGGVKDNVKDEWAESQERR*
Ga0058689_101754371	3300004016	Agave	GLIKEVGGTKDNVSDELDEAAGRGRRRREESKEAAPEEVGQPGSGGVKANVGDEFSESQERH*
Ga0063356_1036602222	3300004463	Arabidopsis Thaliana Rhizosphere	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRLPGSGGVKDNVRDEWADSQERR*
Ga0058697_100122652	3300005562	Agave	VTDRRTGSGGTEDNVRDELDEAAERGRREGDTRKEAVEGQAGSGGVKDNVRDEWDESQERR*
Ga0058697_100778803	3300005562	Agave	MTELEHRLGSGGAKDNVRDELAEALGKAEGETARKEAAPEEERPPGSGGIKDNVRDELSESQERR*
Ga0058697_101554501	3300005562	Agave	MTELEHRVGSGGAKDNVSHELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEW
Ga0058697_101689492	3300005562	Agave	MAKGTVKDNVRDELDEAAGRGRREREERKDATPEEVRQPGSGGIKDNVQDEWAESQERR*
Ga0058697_106736621	3300005562	Agave	MTELDYRPGSGGVKDNVRDELDEAARQGRGGRTTRKEAAPEEVGQPGSGGVKDNVRDELAESQESL
Ga0079217_103125472	3300006876	Agricultural Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0079217_104096851	3300006876	Agricultural Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSEGVKDNVRDELAESQESR*
Ga0079217_108475381	3300006876	Agricultural Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVKDEWAESQERL*
Ga0079215_101016381	3300006894	Agricultural Soil	MAQGTVKDNTRDELDEAAGRGRRDREDRKEATPEEVKEPGSGGVKGNVQDEWAESQERR*
Ga0079215_109000271	3300006894	Agricultural Soil	MALGTVKDNVRDELNEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQQRR*
Ga0079215_109690722	3300006894	Agricultural Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPDEVRQPASGGVKDNVRDESAESQERS*
Ga0079216_100246522	3300006918	Agricultural Soil	MALGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVKDEWAESQERL*
Ga0079216_107487432	3300006918	Agricultural Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRDGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0079216_110115172	3300006918	Agricultural Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPDGARRPGSGGVKNNVQDEWAGSQERR*
Ga0079218_116526312	3300007004	Agricultural Soil	MAQGTVKDNIRDELDEAAGRGRRDRDDRKEATPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0105679_105458181	3300007790	Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKNNVRDEWAESQERR*
Ga0126307_100665083	3300009789	Serpentine Soil	MAQRTVKDNVRDELDEASGRGRREREDRKEAAPEEVVQPGSGGVKDNVRDELAETQERR*
Ga0126307_100946814	3300009789	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVQDEWAESQQRR*
Ga0126307_101893804	3300009789	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAESQERR*
Ga0126307_102054142	3300009789	Serpentine Soil	TTGRIKEAGGTKDNVRDELDEAAGRGRRKRDDRKEAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0126307_102668372	3300009789	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRGREDRKEVTPEEVRQPGSGGLKDNVRDEWAESQERR*
Ga0126307_104305063	3300009789	Serpentine Soil	MTQGTVKENVRDELNEAAGRGRRDREDRKEAALEEVRQPGSGGVKDNVRDESAESQERS*
Ga0126307_104792732	3300009789	Serpentine Soil	MTQGTVKDNVRDELNEAAGRGRREREDRKEATPQEVRQPGSGGVKDTVQDELAESQERR*
Ga0126307_105008583	3300009789	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGTREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR*
Ga0126307_106437201	3300009789	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDLKGATPEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126307_107840142	3300009789	Serpentine Soil	MAQGSVKDNARDELDEAAGRGRREREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126307_108405772	3300009789	Serpentine Soil	MTERDRRPGSGGVKDNVRDELDEAAGQGRRRSAAQKEAAPKVEEPPGSGGIKDNVRDEWDSSQESR*
Ga0126307_113400831	3300009789	Serpentine Soil	MTQGTVKENVRDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126307_113532142	3300009789	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQQRR*
Ga0126307_116363581	3300009789	Serpentine Soil	MKELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126307_117009241	3300009789	Serpentine Soil	MTELEHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDEWAESQERR*
Ga0126307_117287531	3300009789	Serpentine Soil	MAQGTAKDNARDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0126313_102040961	3300009840	Serpentine Soil	MTQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS*
Ga0126313_102870113	3300009840	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR*
Ga0126313_104868892	3300009840	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDEWAESQERR*
Ga0126313_105365651	3300009840	Serpentine Soil	MAKGTVKDNLRDELDEAAGRGRREREECKDATPEEVRQPGSGGIKDNVRDEWAESQERR*
Ga0126313_105603011	3300009840	Serpentine Soil	TKESSMTELDHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126313_106348282	3300009840	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR*
Ga0126313_107263112	3300009840	Serpentine Soil	GTKDNVTDELDEAAGRGRRKRDDRKEASEEVGQPGSGGVKANVRDEWAESQGRR*
Ga0126313_109487662	3300009840	Serpentine Soil	VKDNVRDELDEAAGRGRREREDRKEAAPEEVVQPGSGGVKDNVQDELAETQERR*
Ga0126313_117695361	3300009840	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEGPPGSGGIKDNVRDELSESQESR*
Ga0126305_100934663	3300010036	Serpentine Soil	MTKLDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126305_101317392	3300010036	Serpentine Soil	MAQGTVKDNVRDELDKAAGRARRKRGDREEATPEEVRQPGSGGVKDN
Ga0126305_103542542	3300010036	Serpentine Soil	MTQGTVKDNVRDELDEAAGRGRREREDRKEATPQEVRQPGSGGVKDTVQDELAESQERR*
Ga0126305_105955672	3300010036	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATREEVRQPASVGVKDNVRDESAESQERR*
Ga0126305_112510821	3300010036	Serpentine Soil	KESTMTELDHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126304_102548891	3300010037	Serpentine Soil	MTERDRRPGSGGVKDNVRDELDEAAGQGRGGRTAHKKAAPEVEEPPGTGGIKDNFRDELALTQESR*
Ga0126304_105154212	3300010037	Serpentine Soil	MAQGTVKDNVRDELDKAAGRARRKRGDREEATPEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126304_105635841	3300010037	Serpentine Soil	MTQGTVKENVRDELNEAAGRGRRDREDRKEAALEEVRQPGSGGVKDNVRDESAESQERR*
Ga0126304_106760091	3300010037	Serpentine Soil	MTELEHRLGSGGAKVNVRDELAEAAGQGRGGRTARKEAAPEERPPGSGGVKDNVRDELAETQESR*
Ga0126304_106838683	3300010037	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVR
Ga0126315_100203803	3300010038	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRKREDRKEATPEELKQPGSGGVKDNVRDEWAESQERR*
Ga0126315_100513613	3300010038	Serpentine Soil	GTKDNVTDELDEAAGRGRRKRDDRKEAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0126315_100744311	3300010038	Serpentine Soil	QERRAQDMTQGTVKENVRDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126315_104391011	3300010038	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRREREVRREATPKEVRQPGSGGVKDNVQDEWAETQERR*
Ga0126315_107160041	3300010038	Serpentine Soil	MAQGTVKDNAKDELDEAAGRGRRDREARKEATPQEVKQPGSGGVEDNVKDEWAESQQRS*
Ga0126309_100322402	3300010039	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126309_100482153	3300010039	Serpentine Soil	VEPYEQERWAQDMPQGTVKDNVRDELDEATGRGRRDREDRKEATPEEVRHTGSGGVKDNVQDEWAESQKRR*
Ga0126309_100937981	3300010039	Serpentine Soil	MAQGSVKDNARDQLDEAAWRGRRDREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126309_101122131	3300010039	Serpentine Soil	MAQGTAKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0126309_101417322	3300010039	Serpentine Soil	MAQGTVKDNVRDELDEAVGRGRRDRVDRKEATPEELKQPGSGGVKDNVQDEWAESQERR*
Ga0126309_104459181	3300010039	Serpentine Soil	QDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR*
Ga0126309_105079672	3300010039	Serpentine Soil	MAQGTVKDNVSDELDEAAGRGRRDREDRKEAAPEEVGQPGSGGVKANVRDELAESQERR*
Ga0126309_109680811	3300010039	Serpentine Soil	MAQGTVKDNVRDELDEAAGRGRRDREDRKEATPEEIVRQLGSGGVKDNVRDEWADSQERR
Ga0126308_100889004	3300010040	Serpentine Soil	MAQGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR*
Ga0126308_102205221	3300010040	Serpentine Soil	KDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126308_103157922	3300010040	Serpentine Soil	MTQGTVKENVRDELDEAAGRGRRDTEDRKEATPEEVKQPGSGGVKDNVKDEWAESQERR*
Ga0126308_104932102	3300010040	Serpentine Soil	MAQRTVKDNVRGELDEAAGRGRREREDRKEAAPEEVVQPGSGGVKDNVRDELAETQERR*
Ga0126308_106301932	3300010040	Serpentine Soil	MTELEHRLGSGGVKDNARDELAEAAGQGSGGRTARKEAAPEEERPPGSGGVKDNVRDELAETQESR*
Ga0126308_107007991	3300010040	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKEATPEEVRQPGSGGVKDNVQDEWAEPQERR*
Ga0126308_108285831	3300010040	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDEWAESQERR*
Ga0126308_109579571	3300010040	Serpentine Soil	QGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVQDEWAESQQRR*
Ga0126312_102215832	3300010041	Serpentine Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVRDESAESQEHR*
Ga0126312_105318401	3300010041	Serpentine Soil	MTQGTVKDNARDELDEAAGRGRRNRDDRKEAAPAEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126312_105572092	3300010041	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126312_105912842	3300010041	Serpentine Soil	MAQGTVKDNARDELDEAAGRGRRESEDRKEATPEEVKQPGSGGVKDNVKDEWAES
Ga0126312_107010372	3300010041	Serpentine Soil	MAQGSVKDNARDELDEAAWRGRRDREDHKEVTPEEVKQPGSGGVKDNVRDEWAESQERR*
Ga0126312_111429051	3300010041	Serpentine Soil	MAQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS*
Ga0126314_101205362	3300010042	Serpentine Soil	MAQGTVKDNVRDELDEAAGREAGAREERKEATPEEVRQPGSGGVKDNVQDEWAESQARR*
Ga0126314_103051051	3300010042	Serpentine Soil	NVRDELAEAAGQGRGGRTARKAAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126314_106360681	3300010042	Serpentine Soil	GGTKDNVRDELDEAAGRGRRKRGDRKEAAPEVVGQPGSGGVKANVRDEWAESQERR*
Ga0126314_106784503	3300010042	Serpentine Soil	QERRDQDMAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQEHR*
Ga0126314_109009961	3300010042	Serpentine Soil	NVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126314_109513001	3300010042	Serpentine Soil	NLRDELDEAAGRGRRERDDRKDAVLEEVGQPGSGGVKDNVRDEWAESQESR*
Ga0126314_112125341	3300010042	Serpentine Soil	MTELDHRLGSGGAKDNVTDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQ
Ga0126314_114034781	3300010042	Serpentine Soil	GRIKEAGGTKDNLTDELDEAAGRGRRRRDDRKEAASEEVGQPGSGGVKANVRDEWAESQERR*
Ga0126310_100696074	3300010044	Serpentine Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERTPGSGGVKDNVRDELAESQESR*
Ga0126310_110522031	3300010044	Serpentine Soil	MAQGTVKDNVRDELDQAAGRGRRDREERKGATPEEVRQPASGGVKDNVRDESAESQEHR*
Ga0126311_104330012	3300010045	Serpentine Soil	MTELDHRLGSGGIKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR*
Ga0126311_111536371	3300010045	Serpentine Soil	QGTVKDNVRDELDEAAGREAGAREERKEATPEEVRQPGSGGVKDNVQDEWAESQARR*
Ga0126311_118698651	3300010045	Serpentine Soil	MAQGSVKDNARDELDEAAGRGRREREHHKEVTPGEVKQPGSGGVKGNVRDEWAESQERR*
Ga0126306_101886352	3300010166	Serpentine Soil	MAQGTVKYNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGGKDNVQDEWAESQERR*
Ga0126306_107093481	3300010166	Serpentine Soil	MTERERRPGSGGTLDNVRDERDEAAGQGKRGRTDRKEAAPEEVVQPGSGGVKDNVRDELAESQENL*
Ga0126306_108004271	3300010166	Serpentine Soil	NVSDELDEAAGRGRRRRDDRKEAAPEEVGRPGSGGVKANVRDELAESQERR*
Ga0126306_108229912	3300010166	Serpentine Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVRDEWAESQERR*
Ga0126306_110776642	3300010166	Serpentine Soil	MAQGSVKNNARDELDEAAGRGRREREDHKEVTPEEVKQPGSGGVKDNV
Ga0136632_102035942	3300012093	Polar Desert Sand	MTPGTVKDNARDELEKAAGRGRRNREDRKEATPEKARQSGSGGVKDNVQDEWDQSQERR*
Ga0136620_103463861	3300012186	Polar Desert Sand	MTQGTVKDNARDKLDEAAGRGRREREDRKEATPEKVRQSGSGGVKDNVQDEWDQSQERR*
Ga0136615_101337501	3300012678	Polar Desert Sand	MAQGTLKDNARDELDKAAGRGRRDREDRKEATPEKVRQSGSGGVKDNVQDEWDQSQERR*
Ga0162650_1000166681	3300012939	Soil	ENVRDELDEAAGRGRRKRDDRKEAAPEEVGQPGSGGVKANVRDELAESQGRR*
Ga0182001_104285701	3300014488	Soil	MTHGTVKDNARDELDKAAGRGRREREDRKEAAPEEVKQPGSGGVKDNVQDEWAESQERR*
Ga0182008_109222322	3300014497	Rhizosphere	MAQGTVKDNVGDELDEAAGRGRRKREGRKEAAPEDVGRPGSGGVKANVRDELAESQERR*
Ga0190275_106017241	3300018432	Soil	KEAGGTKDNARDELDEAAGRGRRKRDDRKEAAHEVVGQPGSGGVKANIRDELAESQERR
Ga0190275_106456783	3300018432	Soil	MAQGTVKDNARDELDEAAGRGRRDRENRKEDTPEVVRQPGSGRVKDNVKDEWDESQERR
Ga0190275_115014022	3300018432	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGVKDNVRDEWADSQERR
Ga0190275_123546062	3300018432	Soil	TDELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEWAESQERR
Ga0190269_102178941	3300018465	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEIVRQPGSGGVKDNVRDEWADSQERR
Ga0190268_100244601	3300018466	Soil	ERWAPDMAQGTVKDNARDELDEAAGRGRRDREVRKEATLEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190268_103096142	3300018466	Soil	MAQGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAETQERR
Ga0190268_111465572	3300018466	Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190268_119058101	3300018466	Soil	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQQRR
Ga0190270_107613002	3300018469	Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKGATPEEVRQPGSGGVKDNVQDEWAESQERR
Ga0190270_108648781	3300018469	Soil	MTELDHRLGSGGAKDNVRDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0190270_116186441	3300018469	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKGATTEEIVRQPGSGGVKDNVRDEWADSQERR
Ga0190274_101349883	3300018476	Soil	MAQGTVKDNIRDELDEAAGRGRRDREDRKEATPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0190274_107239213	3300018476	Soil	MAQGTIKDNVRDELDEAGGRSRRDREERKEATPEEIVRQPGSGGVKDNVWDEWADSQERR
Ga0190274_137334001	3300018476	Soil	MTELDHRLGSGGGKDNVRDELAEAAGQGRGGRTARKEAAPEEGPPGSGGVKDNVRDELAESQESR
Ga0190264_103166391	3300019377	Soil	MTELDHRLGSGGVKDNARDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELSESQESR
Ga0190267_103528941	3300019767	Soil	KDNVRDELDEAAGPGGGERDDRKEAAPEEVGQPGSGGVKANVRDEWAESQERR
Ga0196962_100020666	3300024430	Soil	MAQGTVKDNARDELDEAAGRGRRDREVRKEATPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0209387_10726172	3300027639	Agricultural Soil	MAQGTVKDNTRDELDEAAGRGRRDREDRKEATPEEVKEPGSGGVKGNVQDEWAESQERR
Ga0209485_11018842	3300027691	Agricultural Soil	MTELDHRLGSGGGKDNARDELAEAAGQGRDGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0272482_100225322	3300028578	Soil	MTRGTVKDNVRDELDEAAGRGRRDREDRKEAAPEEVKQPGSGGVKDNVRDEWAESQERR
Ga0307297_100664961	3300028754	Soil	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEVRQPGSGGIKDNVRDEWADSQERR
Ga0268240_100415343	3300030496	Soil	GSGGTKDNVRDELGQAAGQGRRRRAAPEEVVQPGSGGIKDNVRDELAESQERR
Ga0268240_100540003	3300030496	Soil	MTERERRPGSGGVKDNVREELEEAAAGQGRRRRGARKEAAPEVEEPPGSGGIKDNVRDEWDSSQES
Ga0268243_10539921	3300030510	Soil	MTELEHRVGSGGAKDNVSHELDEAAGRGRRGREDRKEAAPEEVGRPGSGGVKANVRDEWAESQERR
Ga0308201_101993971	3300031091	Soil	MAQGTVKDNVRDELDEAAGRGRRAREERKEATPEEIARQPGSGGVKDNVQDEWADSQQRR
Ga0308204_102434122	3300031092	Soil	MTELDHRLGSGGAKDNVRDELAEAAGKGRGGRTARKEAAPEEERPPGSGGVKDNVRDELSESQESR
Ga0307408_1015783332	3300031548	Rhizosphere	MTELDHRLGSGGVKDNARDELAEAAGQGRGGRTARKEAAPEEERPPGSGGVKDNVRDELAESQESR
Ga0307408_1021718011	3300031548	Rhizosphere	MAQGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR
Ga0307413_101114322	3300031824	Rhizosphere	AQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR
Ga0307410_108912381	3300031852	Rhizosphere	MTQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQQRR
Ga0307406_114108392	3300031901	Rhizosphere	AQGTVKDNAKDELDEAAGRGRRDREARKEATPQEVKQPGSGGVEDNVKDEWAESQQRS
Ga0307409_1011435671	3300031995	Rhizosphere	KDNARDELDEAAGRGRRDTEDRKEAAPAEVKQPGSGGVKDNVKDERAESQERR
Ga0307409_1015378352	3300031995	Rhizosphere	EAGGTKDNVSDELDEAAGRGRRRREDRKEAAPEEVGQPGSGGVKANVRDELAESQERRARRK
Ga0307409_1017733451	3300031995	Rhizosphere	QGTVKDNVRDELDEAAVRGRRNREDRKEATPEELKQPGSGGVKDNVQDELAESQERR
Ga0307409_1027786891	3300031995	Rhizosphere	MAQGSVKDNARDELDEAAGRGRREREDHTEVTPEEVKQPGSGGVKDNVQDEWAESQERR
Ga0307416_1001344612	3300032002	Rhizosphere	MTQGTVKDNARDELDEAAGRGRRDREDRKEATPQEVKQPGSGGVKDNVKDEWAESQERR
Ga0307414_121108022	3300032004	Rhizosphere	AQDMAQGTVKDNARDELDEAAGRGRCDREDRKEAAPQEVKQPGSGGVKDNVKDEWAESQERR
Ga0307411_108490142	3300032005	Rhizosphere	MAQGTVKDNVRDELDKAAGRGRRDREDRKGATPEEVRQPASGGVKDNVRDESAESQERR
Ga0326721_107831482	3300032080	Soil	MAQGTVKDNVRDELDEAAGRGRSEREERKEATPEEVRLPGSGGVKDNVRDEWADS
Ga0307415_1004218942	3300032126	Rhizosphere	RDELDEAAGRGRRKRDERKEAAPEEVGQPGSGGVKANVRDEWAESQGRR
Ga0307415_1008976231	3300032126	Rhizosphere	MTQGPVKDNVRDELDEAAGRGRGDREDRKEATSQEVRQPGSGGVKDNVQDEWAESQQRR
Ga0307415_1013325231	3300032126	Rhizosphere	AQDMTQGTVKDNARDELDEAAGRGRRDTEDRKEATPEEVRQPGSGGVKDNVKDEWAESQERR
Ga0307415_1022826481	3300032126	Rhizosphere	TQGNVKDNVRDELDEAAGRSRREREDRKEAALEEVRQPGSGGVKDNVRDEWAESQERS
Ga0268251_101706302	3300032159	Agave	VTDRRTGSGGTEDNVRDELDEAAERGRREGDTRKEAVEGQAGSGGVKDNVRDEWDESQER
Ga0334924_038616_76_258	3300033989	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKETTPEEIARQPGSGGVKDNVRDEWADSQQRR
Ga0334915_005692_1656_1838	3300034132	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKETTPEEIARQPGSGGVKDNVRDEWADSQERR
Ga0334923_088593_205_387	3300034376	Hypolithic Biocrust	MAQGTVKDNVRDELDEAAGRGRREREERKEATPEEIARQPGSGGVKDNVRDEWADSQQRR
Ga0334917_044083_2_166	3300034391	Hypolithic Biocrust	KDNVRDELDEAAGRGRREREERKEATPEEIVRQPGSGGVKDNVRDEWADSQQRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F043687

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences