Scaffold Ga0209991_10002967

Overview

Basic Information

• Taxon OID: 3300024429
• Scaffold ID: Ga0209991_10002967
• Source Dataset Name: Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7944
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -44.283
  • Long. (^o): -75.865
  • Depth (m): 3285

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025034	Metagenome	203	Y
F034895	Metagenome	173	N
F068735	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209991_1000296712	F025034	N/A	MKEDYIDKEANELCGLIENQLERIITFDDGMLDDKIFTNIKSHAIKLLKEWHL
Ga0209991_1000296713	F034895	N/A	MITLLEQLRPEIVEALEKNRDKYDYPVTELYNSLDTKYLYSELSVGEVRDLTLWTDVDERTWDYVDWKYGVKLFVDEIDAKRY
Ga0209991_1000296722	F068735	N/A	MSRRKQLYEHFIRTDWNGLATKIKNLKKNTQRKRNEKI