NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F068735

Metagenome / Metatranscriptome Family F068735

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F068735
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 38 residues
Representative Sequence MSRKKLYEHFIRTDWNGLATKIKNLKKKTQRKRNEKI
Number of Associated Samples 77
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 31.45 %
% of genes near scaffold ends (potentially truncated) 11.29 %
% of genes from short scaffolds (< 2000 bps) 84.68 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (85.484 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(59.677 % of family members)
Environment Ontology (ENVO) Unclassified
(81.452 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(70.968 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.31%    β-sheet: 0.00%    Coil/Unstructured: 47.69%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF14743DNA_ligase_OB_2 22.58
PF04542Sigma70_r2 16.13
PF04404ERF 15.32
PF01068DNA_ligase_A_M 1.61
PF08279HTH_11 0.81
PF13662Toprim_4 0.81
PF12684DUF3799 0.81
PF00303Thymidylat_synt 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 16.13
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 16.13
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 16.13
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 16.13
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 1.61
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 1.61
COG0207Thymidylate synthaseNucleotide transport and metabolism [F] 0.81


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.48 %
All OrganismsrootAll Organisms14.52 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001685|JGI24024J18818_10028087All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium2209Open in IMG/M
3300001717|JGI24522J20083_1003275Not Available1312Open in IMG/M
3300001721|JGI24528J20060_1009755Not Available577Open in IMG/M
3300002511|JGI25131J35506_1015725All Organisms → Viruses → Predicted Viral1041Open in IMG/M
3300002760|JGI25136J39404_1030909Not Available981Open in IMG/M
3300002760|JGI25136J39404_1043005Not Available835Open in IMG/M
3300002760|JGI25136J39404_1085799All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium590Open in IMG/M
3300006726|Ga0098070_103583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1241Open in IMG/M
3300006736|Ga0098033_1099516Not Available828Open in IMG/M
3300006738|Ga0098035_1025167Not Available2290Open in IMG/M
3300006738|Ga0098035_1032266All Organisms → Viruses → Predicted Viral1982Open in IMG/M
3300006738|Ga0098035_1059417Not Available1380Open in IMG/M
3300006738|Ga0098035_1135413Not Available843Open in IMG/M
3300006738|Ga0098035_1186362Not Available696Open in IMG/M
3300006750|Ga0098058_1193394Not Available530Open in IMG/M
3300006751|Ga0098040_1031748Not Available1685Open in IMG/M
3300006751|Ga0098040_1044722All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium1387Open in IMG/M
3300006751|Ga0098040_1062250Not Available1148Open in IMG/M
3300006751|Ga0098040_1068695Not Available1086Open in IMG/M
3300006751|Ga0098040_1069976Not Available1075Open in IMG/M
3300006752|Ga0098048_1062128Not Available1160Open in IMG/M
3300006752|Ga0098048_1181332Not Available624Open in IMG/M
3300006753|Ga0098039_1038190All Organisms → cellular organisms → Bacteria1698Open in IMG/M
3300006753|Ga0098039_1052547Not Available1425Open in IMG/M
3300006753|Ga0098039_1053308Not Available1413Open in IMG/M
3300006753|Ga0098039_1075215Not Available1170Open in IMG/M
3300006753|Ga0098039_1075847Not Available1164Open in IMG/M
3300006754|Ga0098044_1328491Not Available582Open in IMG/M
3300006768|Ga0098071_109249Not Available918Open in IMG/M
3300006789|Ga0098054_1063070Not Available1407Open in IMG/M
3300006789|Ga0098054_1161198Not Available825Open in IMG/M
3300006789|Ga0098054_1175690Not Available785Open in IMG/M
3300006793|Ga0098055_1091263Not Available1194Open in IMG/M
3300006793|Ga0098055_1229659Not Available701Open in IMG/M
3300006921|Ga0098060_1121900Not Available731Open in IMG/M
3300006921|Ga0098060_1189297Not Available564Open in IMG/M
3300006924|Ga0098051_1070798Not Available948Open in IMG/M
3300006924|Ga0098051_1088312Not Available836Open in IMG/M
3300006925|Ga0098050_1145187Not Available598Open in IMG/M
3300006929|Ga0098036_1097287Not Available905Open in IMG/M
3300006929|Ga0098036_1264684Not Available519Open in IMG/M
3300007756|Ga0105664_1056620Not Available1257Open in IMG/M
3300007758|Ga0105668_1002833Not Available861Open in IMG/M
3300008470|Ga0115371_10835353All Organisms → Viruses → Predicted Viral3922Open in IMG/M
3300008470|Ga0115371_11130718Not Available1086Open in IMG/M
3300009030|Ga0114950_11309451Not Available562Open in IMG/M
3300009409|Ga0114993_11152686Not Available547Open in IMG/M
3300009413|Ga0114902_1137160All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon629Open in IMG/M
3300009488|Ga0114925_10003911Not Available7787Open in IMG/M
3300009488|Ga0114925_10091327Not Available1910Open in IMG/M
3300009488|Ga0114925_10226965Not Available1247Open in IMG/M
3300009528|Ga0114920_10043780Not Available2678Open in IMG/M
3300009593|Ga0115011_10240814Not Available1353Open in IMG/M
3300009593|Ga0115011_10531955Not Available938Open in IMG/M
3300009605|Ga0114906_1100033Not Available1042Open in IMG/M
3300009622|Ga0105173_1047816Not Available715Open in IMG/M
3300010149|Ga0098049_1014407Not Available2646Open in IMG/M
3300012950|Ga0163108_11026861Not Available532Open in IMG/M
3300013098|Ga0164320_10041220Not Available1862Open in IMG/M
3300013098|Ga0164320_10066015Not Available1508Open in IMG/M
3300013098|Ga0164320_10203409Not Available917Open in IMG/M
3300013099|Ga0164315_10518282Not Available964Open in IMG/M
3300013101|Ga0164313_11084468Not Available650Open in IMG/M
3300013101|Ga0164313_11122999Not Available637Open in IMG/M
3300013103|Ga0164318_10771854Not Available806Open in IMG/M
3300014903|Ga0164321_10327132Not Available736Open in IMG/M
3300014903|Ga0164321_10371306Not Available698Open in IMG/M
3300017705|Ga0181372_1050731Not Available700Open in IMG/M
3300017718|Ga0181375_1045406Not Available733Open in IMG/M
3300017718|Ga0181375_1079068Not Available534Open in IMG/M
3300017764|Ga0181385_1077013Not Available1027Open in IMG/M
3300017772|Ga0181430_1036955Not Available1546Open in IMG/M
3300017775|Ga0181432_1087181Not Available918Open in IMG/M
3300021084|Ga0206678_10379058Not Available668Open in IMG/M
3300021185|Ga0206682_10173876Not Available998Open in IMG/M
3300021442|Ga0206685_10007559All Organisms → Viruses3356Open in IMG/M
3300021442|Ga0206685_10016153All Organisms → Viruses → Predicted Viral2346Open in IMG/M
3300021443|Ga0206681_10153668Not Available901Open in IMG/M
3300021471|Ga0190359_1232823Not Available590Open in IMG/M
(restricted) 3300023112|Ga0233411_10231611Not Available613Open in IMG/M
(restricted) 3300024052|Ga0255050_10051614Not Available879Open in IMG/M
3300024429|Ga0209991_10002967Not Available7944Open in IMG/M
3300024429|Ga0209991_10219329Not Available933Open in IMG/M
(restricted) 3300024517|Ga0255049_10068746Not Available1604Open in IMG/M
(restricted) 3300024518|Ga0255048_10009952Not Available5055Open in IMG/M
(restricted) 3300024518|Ga0255048_10155716Not Available1120Open in IMG/M
(restricted) 3300024520|Ga0255047_10154185Not Available1174Open in IMG/M
(restricted) 3300024521|Ga0255056_10020025Not Available2427Open in IMG/M
3300025039|Ga0207878_114244Not Available912Open in IMG/M
3300025050|Ga0207892_1003483Not Available1572Open in IMG/M
3300025052|Ga0207906_1004532Not Available2070Open in IMG/M
3300025052|Ga0207906_1033646Not Available703Open in IMG/M
3300025052|Ga0207906_1043586Not Available608Open in IMG/M
3300025066|Ga0208012_1010006Not Available1708Open in IMG/M
3300025070|Ga0208667_1063741Not Available569Open in IMG/M
3300025072|Ga0208920_1002564All Organisms → Viruses4457Open in IMG/M
3300025072|Ga0208920_1024218Not Available1295Open in IMG/M
3300025085|Ga0208792_1006160All Organisms → Viruses2975Open in IMG/M
3300025096|Ga0208011_1028462All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300025096|Ga0208011_1094126Not Available642Open in IMG/M
3300025103|Ga0208013_1003708Not Available5784Open in IMG/M
3300025108|Ga0208793_1086896Not Available894Open in IMG/M
3300025110|Ga0208158_1068167Not Available858Open in IMG/M
3300025118|Ga0208790_1060024Not Available1175Open in IMG/M
3300025125|Ga0209644_1013439Not Available1730Open in IMG/M
3300025125|Ga0209644_1038878Not Available1073Open in IMG/M
3300025125|Ga0209644_1128921Not Available603Open in IMG/M
3300025133|Ga0208299_1037815Not Available1942Open in IMG/M
3300025133|Ga0208299_1070811All Organisms → Viruses1253Open in IMG/M
3300025248|Ga0207904_1059495Not Available636Open in IMG/M
3300025873|Ga0209757_10008042Not Available2756Open in IMG/M
3300025873|Ga0209757_10008095All Organisms → Viruses2747Open in IMG/M
3300025873|Ga0209757_10023358All Organisms → Viruses → Predicted Viral1728Open in IMG/M
3300025873|Ga0209757_10115499Not Available828Open in IMG/M
3300025873|Ga0209757_10171832Not Available682Open in IMG/M
3300027834|Ga0209344_10471693Not Available567Open in IMG/M
(restricted) 3300027881|Ga0255055_10092065Not Available1674Open in IMG/M
3300027906|Ga0209404_10053201Not Available2298Open in IMG/M
3300032048|Ga0315329_10033740Not Available2426Open in IMG/M
3300032360|Ga0315334_10253744All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon1448Open in IMG/M
3300032360|Ga0315334_11413666Not Available598Open in IMG/M
3300032820|Ga0310342_101389357Not Available834Open in IMG/M
3300032820|Ga0310342_101792238Not Available733Open in IMG/M
3300032820|Ga0310342_102267721Not Available650Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine59.68%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment7.26%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater6.45%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface5.65%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater5.65%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean2.42%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.42%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.42%
Background SeawaterEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater1.61%
MarineEnvironmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine1.61%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.61%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic0.81%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.81%
Hydrothermal Vent Microbial MatEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat0.81%
SeawaterEnvironmental → Aquatic → Marine → Gulf → Unclassified → Seawater0.81%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001685Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2EnvironmentalOpen in IMG/M
3300001717Marine viral communities from the Pacific Ocean - LP-47EnvironmentalOpen in IMG/M
3300001721Marine viral communities from the Pacific Ocean - LP-54EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300006726Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006768Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007756Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300007758Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assemblyEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009030Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaGEnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009413Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12EnvironmentalOpen in IMG/M
3300009488Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaGEnvironmentalOpen in IMG/M
3300009528Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaGEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300013099Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay6, Core 4569-2, 0-3 cmEnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300013103Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cmEnvironmentalOpen in IMG/M
3300014903Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cmEnvironmentalOpen in IMG/M
3300017705Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaGEnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300021471Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-2-3_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300024052 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5EnvironmentalOpen in IMG/M
3300024429Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300024521 (restricted)Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1EnvironmentalOpen in IMG/M
3300025039Marine viral communities from the Pacific Ocean - LP-41 (SPAdes)EnvironmentalOpen in IMG/M
3300025050Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)EnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025248Marine viral communities from the Deep Pacific Ocean - MSP-118 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300027834Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Santa Barbara Oil Seep Sample 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027881 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24024J18818_1002808723300001685MarineMSRKKIYEHFISTDWNGIGTKIKNLKKKPQRKKNEKI*
JGI24522J20083_100327523300001717MarineMSRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEKI*
JGI24528J20060_100975523300001721MarineMNRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEKI*
JGI25131J35506_101572513300002511MarineMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKV*
JGI25136J39404_103090923300002760MarineSGQMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKI*
JGI25136J39404_104300523300002760MarineMILKMNRRQLYNHFILTDWRGLSTKIKQMKKKYLKKRNEKI*
JGI25136J39404_108579923300002760MarineMIMSRKQLYEHFIKTDWNGLATKIKNLKKKTQRKKNEKI*
Ga0098070_10358313300006726MarineMTRRKLYQHFIQTDWNGLATKIKNLKKKQQRKKR*
Ga0098033_109951643300006736MarineMSRKQLYDHFIITNWRGLASKIKEMRKKTQRKKK*
Ga0098035_102516723300006738MarineMTRRKLYNHLIQTDWRGLGTKIKQLKKKTQKKRNEKI*
Ga0098035_103226633300006738MarineMSRNKKLYEHFIRTDWHGIATKIKNLKKKTQRKKRDEKI*
Ga0098035_105941733300006738MarineMSRSKKLYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI*
Ga0098035_113541323300006738MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKIQRKRNEKI*
Ga0098035_118636223300006738MarineMSRSKKLYEHFIRTNWNGLATKIKNLKKKTQRKKRDEKI*
Ga0098058_119339423300006750MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKTQRKRNEKI*
Ga0098040_103174833300006751MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKIQRKRRDEKI*
Ga0098040_104472233300006751MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEKI*
Ga0098040_106225023300006751MarineMSRKKIYEHFISTDWNGIGTKIKNLRKKPQRKKNEKI*
Ga0098040_106869523300006751MarineMSRNKKLYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI*
Ga0098040_106997633300006751MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQKKRNEKI*
Ga0098048_106212823300006752MarineMSRGKKIYEHFISTDWGGIGTKIKNLKKKQQQKKNEKI*
Ga0098048_118133213300006752MarineMSRSKKLYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI*
Ga0098039_103819043300006753MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI*
Ga0098039_105254743300006753MarineMTRRKLYEHFIKTDWNGLGTKIKNMKKKPQRKKNEKI*
Ga0098039_105330843300006753MarineMTRKQLYEHFIRTDWNGLATKIKNLKKKTQRKKNEKI*
Ga0098039_107521523300006753MarineMSRKQLYDHFIITNWRGLASKIKEMKKKTQRKKK*
Ga0098039_107584713300006753MarineMSRRKLYQHFIITNWNGLGTKIKNMKKKIQRKKNEKI*
Ga0098044_132849123300006754MarineMTRRKLYQHFIQTDWNGLATKIKNLKKKQLRKKR*
Ga0098071_10924933300006768MarineMSRKQLYEHFIITDWNGLRTKIKNMKKKQQRKRNEKI*
Ga0098054_106307023300006789MarineMSRKKIYEHFISTDWNGIGTKIKNLRKKQQRKKNEKI*
Ga0098054_116119823300006789MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEKI*
Ga0098054_117569023300006789MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI*
Ga0098055_109126323300006793MarineMEFYINLIQMSRKKIYEHFISTDWNGIGTKIKNLRKKQQRKKNEKI*
Ga0098055_122965923300006793MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKRDEKI*
Ga0098060_112190023300006921MarineMSRGKKIYEHFIITDWHGIATKIKNLKKKTQRKRNEKI*
Ga0098060_118929723300006921MarineMSRSKKLYEHFIRTDWHGIATKIKEFKKQKRKRNEKV*
Ga0098051_107079813300006924MarineRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI*
Ga0098051_108831213300006924MarineKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEKI*
Ga0098050_114518713300006925MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEK
Ga0098036_109728713300006929MarineRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI*
Ga0098036_126468433300006929MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKQQRKRNEKI*
Ga0105664_105662023300007756Background SeawaterMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKI*
Ga0105668_100283323300007758Background SeawaterMNRKQLYEHFILTDWRGIASKIKEMKKKPQRKKR*
Ga0115371_1083535333300008470SedimentMMSRKKLYDHFILTDWRGLATKIKQLKKKTQNKRNEKI*
Ga0115371_1113071833300008470SedimentMSRKQIYEHFVKTDWNGLATKIKQLKKKIQNKRNEKV*
Ga0114950_1130945123300009030Deep SubsurfaceMILKMNRRQLYNHFVLTDWRGLGTKIKQLKKKYQNKRNEKV*
Ga0114993_1115268613300009409MarineMSRKQIYEHFIKTDWNGLATKIKQLKKKYQNKRNEKV*
Ga0114902_113716023300009413Deep OceanMSRKKLYEHFIRTDWNGLATKIKNLKKKNQRTKTKGTNK*
Ga0114925_10003911103300009488Deep SubsurfaceMSRKQIYEHFISTNWNGLADKIKEMKKKNQRKKR*
Ga0114925_1009132723300009488Deep SubsurfaceMSRKKLYEHFIQTDWNGLATKIKNLKKKQQRKKR*
Ga0114925_1022696543300009488Deep SubsurfaceMTRRKLYNHLIQTDWRGLGTKIKQLKKKIQKKRNEKI*
Ga0114920_1004378063300009528Deep SubsurfaceMSRRKQLYEHFIRTDWNGLATKIKNLKKNTQRKRNEKI*
Ga0115011_1024081423300009593MarineMRGKKIYEHFITTDWQGIATKIKNLKKKTQRKRNEKI*
Ga0115011_1053195523300009593MarineMRGRKIYEHFIATDWHGIATKIKNLKKKTQRKRNEKI*
Ga0114906_110003323300009605Deep OceanMTRKKLYEHFIRTDWNGLATKIKNLKKKTQRKKRDEKI*
Ga0105173_104781623300009622Marine OceanicLQYGKMILKMNRRQLYNHFILTDWRGIATKIKDLKKKNYKTKTKGTNK*
Ga0098049_101440763300010149MarineMRGKMIYEHFIRTDWHGIATKIKNLKKKTQKKRNEKI*
Ga0163108_1102686113300012950SeawaterMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI*
Ga0164320_1004122033300013098Marine SedimentMNRRQLYNHFVLTDWRGLGTKIKQLKKKYQNKRNEKI*
Ga0164320_1006601523300013098Marine SedimentMNRRQLYNHFVLTDWRGLGTKIKNLNKKTQRKKNEKI*
Ga0164320_1020340923300013098Marine SedimentMNRKQLYEHFIKTDWNGLATKIKNLKKKTQRKKNEKI*
Ga0164315_1051828213300013099Marine SedimentKKLYEHFIKTNWNDLGTKIKNMKKKPQRKKNEKI*
Ga0164313_1108446823300013101Marine SedimentYGQMILKMNRRQLYNHFVLTDWRGLGTKIKNLKKKTQRKKNEKI*
Ga0164313_1112299923300013101Marine SedimentMILKMNRRQLYNHFVLTDWRGLGTKIKQLKKKYQNKRNEKI*
Ga0164318_1077185423300013103Marine SedimentMNRKQLYEHFIKTDWNGLATKIKNLKKKPQPKKR*
Ga0164321_1032713213300014903Marine SedimentMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKKNEKI*
Ga0164321_1037130613300014903Marine SedimentMSRKKLYEHFIRTDWNGLATKIKNLKKKSQRKKNEKI*
Ga0181372_105073113300017705MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQKKRNEKI
Ga0181375_104540623300017718MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI
Ga0181375_107906823300017718MarineMRGKKIYEHFIITDWHGIATKIKNLKKKTQRKRNEKI
Ga0181385_107701323300017764SeawaterMSRKKIYEHFISTDWNEIGTKIKNLKKKPQRKKNEKI
Ga0181430_103695533300017772SeawaterMSRKKLYEHFIRTDWNGLATKIKNLKKKNQRTKTKGTNK
Ga0181432_108718123300017775SeawaterMTRRKLYEHFIKTDWNGLATKIKNLKKKTQRKKNEKI
Ga0206678_1037905823300021084SeawaterMSRKKLYEHFIRTDWNGLATKIKNLKKKIQRKRNEKI
Ga0206682_1017387653300021185SeawaterMSRKKLYEHFIRTDWNGLATKIKNLKKKQQRKRNEKI
Ga0206685_1000755973300021442SeawaterMTRKQLYEHFIRTDWNGLATKIKNLKKKSQRKKNEKI
Ga0206685_1001615323300021442SeawaterMTRRKLYNHLIQTDWRGLGTKIKQLKKKTQKKRNEKI
Ga0206681_1015366823300021443SeawaterMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKI
Ga0190359_123282323300021471Hydrothermal Vent Microbial MatMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI
(restricted) Ga0233411_1023161113300023112SeawaterIMSRKKLYEHFIRTDWNSLATKIKQLKKKTQKKRNEKI
(restricted) Ga0255050_1005161413300024052SeawaterQYGQMILIIMSRKKLYEHFIRTDWNGLATKIKNLKKKSQRKKNEKI
Ga0209991_10002967223300024429Deep SubsurfaceMSRRKQLYEHFIRTDWNGLATKIKNLKKNTQRKRNEKI
Ga0209991_1021932923300024429Deep SubsurfaceMILIIMSRKKLYEHFIRTDWNGLATKIKNLKKKIQRKRNEKI
(restricted) Ga0255049_1006874613300024517SeawaterILIIMSRKKLYEHFIRTDWNGLATKIKNLKKKSQRKKNEKI
(restricted) Ga0255048_1000995273300024518SeawaterMSRKKLYDHFILTNWRGLSAKIKQMKKPQFKKRNEKI
(restricted) Ga0255048_1015571633300024518SeawaterMSRKKLYEHFIRTDWNSLATKIKQLKKKTQKKRNEKI
(restricted) Ga0255047_1015418513300024520SeawaterMSRKKLYEHFIRTDWNGLATKIKNLKKKSQRKKNEKI
(restricted) Ga0255056_1002002523300024521SeawaterMSRKQIYEHFIKTDWNGLATKIKQLKKKYQNKRNEKV
Ga0207878_11424423300025039MarineMMSRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEKI
Ga0207892_100348323300025050MarineMSRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEKI
Ga0207906_100453243300025052MarineMNRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEKI
Ga0207906_103364633300025052MarineMSRKQLYEHFILTDWRGLGTKIKQMKKKYQNKRNEK
Ga0207906_104358613300025052MarineMILKMSRKKLYEHFILTDWRSIATKIKNLKKKTQRKKNEKI
Ga0208012_101000643300025066MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI
Ga0208667_106374123300025070MarineMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEKI
Ga0208920_100256433300025072MarineMSRNKKLYEHFIRTDWHGIATKIKNLKKKTQRKKRDEKI
Ga0208920_102421823300025072MarineMSRSKKLYEHFIRTDWHGIATKIKNLKKKTQRKRRDEKI
Ga0208792_100616013300025085MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKNEKI
Ga0208011_102846233300025096MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKIQRKRRDEKI
Ga0208011_109412623300025096MarineMSRSKKLYEHFIRTNWNGLATKIKNLKKKTQRKKRDEKI
Ga0208013_100370873300025103MarineMSRKKIYEHFISTDWNGIGTKIKNLRKKQQRKKNEKI
Ga0208793_108689613300025108MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNEKI
Ga0208158_106816723300025110MarineMSRGKKIYEHFIITDWHGIATKIKNLKKKTQRKRNEKI
Ga0208790_106002413300025118MarineMSRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKKRDEKI
Ga0209644_101343913300025125MarineMSRKQLYEHFVKTDWNGLATKIKDLRKKNYKAKTKGFNK
Ga0209644_103887823300025125MarineMILKMNRRQLYNHFILTDWRGIATKIKQLKKKYQNKRNEKI
Ga0209644_112892123300025125MarineMNRKQLYEHFIKTDWNGLATKIKNLKKKTQRKKNEKI
Ga0208299_103781533300025133MarineMSRKKLYEHFIRTDWNGLATKIKNLKKKQQQKKNEKI
Ga0208299_107081123300025133MarineMSRKQLYEHFIITDWNGLRTKIKNMKKKQQRKRNEKI
Ga0207904_105949523300025248Deep OceanMRGKKIYEHFIRTDWHGIATKIKNLKKKTQRKRNERT
Ga0209757_1000804243300025873MarineMILKMNRRQLYNHFILTDWRGLSTKIKQMKKKYLKKRNEKI
Ga0209757_1000809563300025873MarineMNRKQLYEHFIKTDWNGLATKIKNLKKKTQRKRNEKI
Ga0209757_1002335843300025873MarineMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKI
Ga0209757_1011549913300025873MarineGQMILKMSRKKLYEHFILTNWRDLATKIKDLKKKTQRKKNEKI
Ga0209757_1017183223300025873MarineMSRKKLYEHLILTDWRGLATKIKNLKKKYQNKRNEKV
Ga0209344_1047169313300027834MarineMSRKKIYEHFISTDWNGIGTKIKNLKKKPQRKKNEKI
(restricted) Ga0255055_1009206533300027881SeawaterMSRKKLYEHFIKTDWNGLATKIKHLKKKIQNKRNEKI
Ga0209404_1005320143300027906MarineMRGKKIYEHFITTDWQGIATKIKNLKKKTQRKRNEKI
Ga0315329_1003374023300032048SeawaterMILKMSRKQLYEHFVKTDWNGLATKIKQLKKKYQNKRNEKV
Ga0315334_1025374433300032360SeawaterMSRKQLYEHIISTDWRGINSKIKQFKKKKHNDRKRNE
Ga0315334_1141366623300032360SeawaterMSRKQLYEHFIITNWNGLATKIKNMKKKPQRKKNEKI
Ga0310342_10138935723300032820SeawaterMSRKKLYEHFIRTDWNGLATKIKNLKKKRQYKRNEKI
Ga0310342_10179223823300032820SeawaterMSRKKLYEHFIITNWNGLGTKIKNMKKKQQRKRNEKI
Ga0310342_10226772123300032820SeawaterLIIMSRKKLYEHFIRTDWNSLATKIKNLKKKQQRKRNEKV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.