Scaffold Ga0244776_10150923

Overview

Basic Information

• Taxon OID: 3300024348
• Scaffold ID: Ga0244776_10150923
• Source Dataset Name: 0.2um to 3um size fraction coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1692
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004162	Metagenome	450	Y
F079219	Metagenome	116	Y
F105514	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_101509231	F079219	N/A	VNKKSARQARLAKQAFYSNVNDKFVSGNAFKVKNDVYTYSASKNGGCIVSKTTGYVCNVEYVGRTKVKCFTFVLGKQVKIELNLKTLEFVS
Ga0244776_101509233	F004162	N/A	MGKPQKVAILLGEKQKIEKEIEKLQRSCQHSTKSIKNVRERLDSTTMVIRYVCDECLLPIGYPNIKEIEDFLKQ
Ga0244776_101509235	F105514	N/A	MANMNKKPNIGQGRNKQQYEDSAKAAFYGWCGVLI