Scaffold Ga0244776

Basic Information
Taxon OID	3300024348 Open in IMG/M
Scaffold ID	Ga0244776_10001136 Open in IMG/M
Source Dataset Name	0.2um to 3um size fraction coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024348 Open in IMG/M

Scaffold ID

Ga0244776_10001136 Open in IMG/M

Source Dataset Name

0.2um to 3um size fraction coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29084
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (74.58%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

29084

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (74.58%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F021988	Metagenome / Metatranscriptome	216	Y
F040629	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000113618	F008814	AGGA	LQQLKPHGWQNLMAEITVLDGIIKDLGQELYQKWYNGLAQEDRTPEASEAMAKNAGETTFWIIQNFMIRFNEAAEALKDK
Ga0244776_1000113624	F000671	GAGG	MEKILCYSCNKSKANLNLKRSALLPINLLMCETCITSKFEPRWTIILSGRQYGHEVVKEYIAKKKYVGEDIKASELLV
Ga0244776_1000113626	F011394	GGA	MANFINKDKDHFKYGINEWTGEANKPVFYTKEMAQKVRELKSPAHDLQMDIVKYPEFLAIRLYENNFSQYDGSMRMRVIDYIEMVKKILESYGVRVELEGKPGGRTR
Ga0244776_1000113630	F040629	AGTAG	MDKYSIKLEVLAEVDAFSEADAREYISDIFNVDDEIKAVKVIKISKNS
Ga0244776_1000113646	F000376	GGAG	MSEYQERAKECKCCTKHVPLPTTLKAYNEIILCPTTHYNVIEYKRMWDSYGSRPPGSIRKHFSEYVQSIVEEKNQGDNKNASN
Ga0244776_100011368	F021988	AGG	MSNFQKEDGTGTTPPPNGAAAGAVTSREATRKAPRQGLKIDTNKHGIRREISTSPRPPKKTGRKKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244776_10001136

Overview

Ecosystem & Geography

Associated Families

Sequences