Scaffold Ga0244775_10165295

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10165295
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1864
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101652952	F006845	AGG	MDLNSYLLEEDFEEFCRKSYERISLACEVFGIVNDEDYYSFKERCYTQLETDYLNSIDKTIH
Ga0244775_101652954	F067646	AGGA	MLEWILYFIGAVFGLVAIGAVISVIAAIYIFNELD
Ga0244775_101652955	F018155	GGAG	MGQNSKAVSKRREELEQEKLDKSIKMYYFQKGAGEHYREIQYQSGRVVRTDFNA
Ga0244775_101652956	F013088	AGGAG	MDEKTKKALWISEDLHKEIKIFAIKNNMNIETASQMVLKLGMCSYKAEKKNGSK