Scaffold Ga0244775_10124369

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10124369
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2184
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001781	Metagenome / Metatranscriptome	635	Y
F024786	Metagenome / Metatranscriptome	204	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101243693	F024786	GGAG	LPVYRVFGIKYHNYYTIIEAADQFEAVDLANALPETEWNSILTDDVIEATDVYLNEDTSLDLQLNI
Ga0244775_101243695	F000441	AGGAGG	MQMSDIYINEQLNKAQKLLWGGSETENIEAHNIISKLIKDRMSEQEGTNE
Ga0244775_101243696	F001781	GGAG	MKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQDDVLEWMMNRDYIVDTMFEDDEEEEDADE
Ga0244775_101243698	F050154	N/A	MKLHLISLNQDMDKDLNVESKINIQGQIMATEHLLSVALDIMARSERI