Scaffold Ga0244775_10103393

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10103393
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2421
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F061853	Metagenome / Metatranscriptome	131	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_101033932	F061853	N/A	MNKKTITLLGLMVALAAVAIATYNSFSQLKDVDYDLFDTEEDEDD
Ga0244775_101033935	F001176	GAG	VSDNGTGMPTPPNNQPSGAVTSQEAARKNPSQGKFKSGFSSPRPPTKVDTNKHGIRRETILGQKKARPKKD
Ga0244775_101033936	F001280	GGCGG	MCVECGCESVGSESGINMIPGGILNVSTDGEAGLTLNMTATPEQRERFISGE
Ga0244775_101033937	F105175	AGGAG	MDGKDLNGFTAPKVNDAPVWDGVQYAADPASAFPATDKSSQDGAGLGNGGK