Scaffold Ga0244775_10069684

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10069684
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3017
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013408	Metagenome / Metatranscriptome	271	Y
F025747	Metagenome / Metatranscriptome	200	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100696843	F033808	AGG	MEMFFLCGIAVGFLIGYPMGLFIDKLDNRIKNGGR
Ga0244775_100696844	F071247	GGAGG	MGSNNKIPFNQTVIKNGRIVRVRKDGSVKADLGPYKTEQTKAK
Ga0244775_100696846	F025747	AGGAGG	VPNLDEFFKKEKVMASELERFGGKKPCAKCDKDAEEYFWEVATLTMTWTCPDGHENTYRL
Ga0244775_100696849	F013408	N/A	INPESKDSLVEFLYRKEYDLTEKEHIVVDFTPYKTKAGKIMSHIVLSDKDKNLTRAIVFPSMYKISLAKMREGMKCQVILSTLDDGTLMIKEIK