Scaffold Ga0244775_10045098

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10045098
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3864
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F007921	Metagenome / Metatranscriptome	342	Y
F014017	Metagenome / Metatranscriptome	266	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1004509810	F007921	AGGA	MIDWLVNRIFRWDPLRKAVFDEVRLYQSVDRSMWEHERSGPTNLTWSEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWESQWAREKSESK
Ga0244775_100450982	F014017	N/A	MDKIEDYLDERHRKKIADEIRYLELPPEWRPYEVIRYIVRIIEKQNG
Ga0244775_100450985	F088905	GGAGG	MSENKDIDTTPVVEVKEEVKVEPKAETKSAPVADSTDYWANAWANRGV
Ga0244775_100450986	F001280	GAGG	MCIECGCESLGSETGIVAVTITDVSRDGESGLTLGMTSTPEQTRQFINE
Ga0244775_100450987	F078716	GGA	MATPPTSEPSGAITSREVPKRYPKQGSRPGIKIDQNRHGIRRETSLDPKPQKKGRPKKV