Scaffold Ga0244775_10036994

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10036994
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4310
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F029752	Metagenome	187	Y
F035769	Metagenome / Metatranscriptome	171	Y
F092068	Metagenome	107	N
F099305	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100369941	F035769	AGG	MNKILGMLLVFLGFSTDTYGTELEKYIVSRNPQDAGDIERLTYEFHRKQSDWRFL
Ga0244775_1003699412	F029752	AGGAG	MNRDYKNLQYILNKTPKELHEWWYSLDDEDQAYAMEIIIEYRKMLDEPLVENLSLARDVLQRFML
Ga0244775_100369942	F008244	AGGAG	MFNTATYAFIDGVSDFKKKIVEQTVQHDGIKTAMNSFVDAQSKYTKAAADAGMQSAMALGMIFTSKTFYDEMSDQFKTMVPAFNTAKSAKSTKVK
Ga0244775_100369945	F092068	AGG	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPNKGFGGSSVVRRTGRGG
Ga0244775_100369948	F099305	N/A	MIHIKRFVDKISLIEGKQGRDVVIPIGEARGLRDELTKLLADNYELLHNKTIVEPVFQVEMNGGRF