Metagenome Family F092068

Overview

Basic Information

• Family ID: F092068
• Family Type: Metagenome
• Number of Sequences: 107
• Average Sequence Length: 53 residues
• Representative Sequence: MTEKKNPNPFINLANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG
• Number of Associated Samples: 73
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 87.74 %
• % of genes near scaffold ends (potentially truncated): 16.82 %
• % of genes from short scaffolds (< 2000 bps): 69.16 %
• Associated GOLD sequencing projects: 67
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (85.047 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (24.299 % of family members)
• Environment Ontology (ENVO): Unclassified (57.009 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (65.421 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 20.37%
  β-sheet: 0.00%
  Coil/Unstructured: 79.63%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04055	Radical_SAM	3.74
PF02739	5_3_exonuc_N	3.74
PF03851	UvdE	1.87
PF02384	N6_Mtase	1.87
PF01541	GIY-YIG	0.93
PF06094	GGACT	0.93
PF07486	Hydrolase_2	0.93
PF00149	Metallophos	0.93
PF12112	DUF3579	0.93
PF00583	Acetyltransf_1	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	3.74
COG4294	UV DNA damage repair endonuclease	Replication, recombination and repair [L]	1.87
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
All Organisms	root	All Organisms	14.95 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
Viruses	superkingdom	All Organisms → Viruses	14.02 %
cellular organisms	root	All Organisms → cellular organisms	0.93 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	8.41 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	8.41 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	8.41 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8.41 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.05 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000929|NpDRAFT_10296712	Not Available	859
3300002408|B570J29032_109726864	All Organisms → Viruses → Predicted Viral	1144
3300002835|B570J40625_100025500	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9643
3300002835|B570J40625_100050307	Not Available	5949
3300002835|B570J40625_100359656	Not Available	1438
3300004112|Ga0065166_10360750	Not Available	602
3300004693|Ga0065167_1063232	Not Available	621
3300004774|Ga0007794_10138231	Not Available	728
3300004805|Ga0007792_10125273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	786
3300005581|Ga0049081_10005585	Not Available	4750
3300005582|Ga0049080_10238785	Not Available	595
3300005582|Ga0049080_10247188	Not Available	583
3300005662|Ga0078894_10694696	Not Available	898
3300005662|Ga0078894_10761888	Not Available	850
3300005662|Ga0078894_10923106	Not Available	756
3300005805|Ga0079957_1000031	Not Available	95427
3300005805|Ga0079957_1013196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6110
3300006484|Ga0070744_10000505	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11267
3300006484|Ga0070744_10018611	Not Available	2063
3300006484|Ga0070744_10102442	Not Available	827
3300006805|Ga0075464_10930155	Not Available	544
3300007544|Ga0102861_1092080	Not Available	806
3300007555|Ga0102817_1033630	Not Available	1128
3300007555|Ga0102817_1067068	Not Available	784
3300007559|Ga0102828_1048251	Not Available	986
3300007559|Ga0102828_1181689	Not Available	535
3300007622|Ga0102863_1163600	Not Available	655
3300007622|Ga0102863_1237592	Not Available	535
3300008107|Ga0114340_1071191	All Organisms → Viruses → Predicted Viral	1463
3300008110|Ga0114343_1009140	Not Available	4932
3300008267|Ga0114364_1097028	Not Available	926
3300008267|Ga0114364_1115142	Not Available	810
3300008267|Ga0114364_1116729	Not Available	801
3300008450|Ga0114880_1202276	Not Available	664
3300008996|Ga0102831_1072821	Not Available	1146
3300008999|Ga0102816_1153420	Not Available	714
3300009026|Ga0102829_1074243	All Organisms → Viruses → Predicted Viral	1041
3300009026|Ga0102829_1279619	Not Available	553
3300009026|Ga0102829_1333699	Not Available	509
3300009068|Ga0114973_10003380	Not Available	11289
3300009068|Ga0114973_10300240	Not Available	856
3300009151|Ga0114962_10000069	Not Available	78315
3300009151|Ga0114962_10000443	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	36759
3300009152|Ga0114980_10347390	Not Available	856
3300009155|Ga0114968_10004445	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10465
3300009158|Ga0114977_10581274	Not Available	606
3300009159|Ga0114978_10051240	Not Available	2850
3300009159|Ga0114978_10226846	Not Available	1170
3300009159|Ga0114978_10417055	Not Available	801
3300009164|Ga0114975_10459911	Not Available	689
3300009182|Ga0114959_10015191	Not Available	5088
3300009419|Ga0114982_1279105	Not Available	523
3300010885|Ga0133913_10464077	Not Available	3340
3300010885|Ga0133913_12927934	Not Available	1143
3300013004|Ga0164293_10086991	Not Available	2426
3300013004|Ga0164293_10360879	Not Available	989
3300013006|Ga0164294_10096914	All Organisms → Viruses → Predicted Viral	2192
3300013014|Ga0164295_10519030	Not Available	914
3300017754|Ga0181344_1044961	Not Available	1324
3300017754|Ga0181344_1152451	Not Available	659
3300017778|Ga0181349_1051712	Not Available	1610
3300020048|Ga0207193_1022199	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7846
3300020048|Ga0207193_1128027	Not Available	2205
3300020048|Ga0207193_1883183	Not Available	502
3300020141|Ga0211732_1227152	Not Available	558
3300020151|Ga0211736_10221047	All Organisms → Viruses → Predicted Viral	1221
3300020151|Ga0211736_10769283	Not Available	793
3300020159|Ga0211734_10424482	Not Available	1087
3300020160|Ga0211733_10819651	Not Available	1383
3300020160|Ga0211733_10829029	Not Available	1703
3300020161|Ga0211726_10865633	Not Available	1481
3300020162|Ga0211735_10746492	Not Available	933
3300020172|Ga0211729_10862471	Not Available	1777
3300020527|Ga0208232_1000369	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9359
3300020562|Ga0208597_1017012	Not Available	1739
3300021519|Ga0194048_10213463	Not Available	711
3300024346|Ga0244775_10036994	Not Available	4310
3300024346|Ga0244775_10038839	Not Available	4202
3300024346|Ga0244775_10090030	Not Available	2615
3300024346|Ga0244775_10568860	Not Available	922
3300024346|Ga0244775_10747961	Not Available	785
3300024346|Ga0244775_11565479	Not Available	502
3300027320|Ga0208923_1010082	Not Available	1656
3300027631|Ga0208133_1000251	Not Available	21421
3300027710|Ga0209599_10228228	Not Available	507
(restricted) 3300027728|Ga0247836_1060476	Not Available	2084
3300027736|Ga0209190_1000689	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	24465
3300027747|Ga0209189_1119797	Not Available	1155
3300027754|Ga0209596_1193663	Not Available	871
3300027760|Ga0209598_10343518	Not Available	567
3300027777|Ga0209829_10240351	Not Available	767
3300027782|Ga0209500_10000784	Not Available	25937
3300027782|Ga0209500_10018548	Not Available	4089
3300027782|Ga0209500_10120943	Not Available	1268
3300027782|Ga0209500_10341656	Not Available	620
3300027797|Ga0209107_10009212	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5557
3300027805|Ga0209229_10088828	Not Available	1390
3300027896|Ga0209777_10107823	Not Available	2362
3300027969|Ga0209191_1015911	All Organisms → Viruses → Predicted Viral	3838
3300028393|Ga0304728_1052927	Not Available	1676
3300031857|Ga0315909_10114481	Not Available	2294
3300034018|Ga0334985_0570465	Not Available	637
3300034022|Ga0335005_0632428	Not Available	575
3300034062|Ga0334995_0654386	Not Available	600
3300034106|Ga0335036_0406334	Not Available	873
3300034283|Ga0335007_0793492	Not Available	515

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.13%
Terrestrial	Environmental → Terrestrial	1.87%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	74.77%
Marine	Environmental → Aquatic → Marine	23.36%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.87%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	53.27%
Lentic	Environmental → Aquatic → Freshwater → Lentic	20.56%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	12.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.35%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.93%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	50.47%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	14.02%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	12.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.35%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	4.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.87%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	24.30%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	12.15%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.35%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	9.35%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.41%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.54%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	4.67%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.67%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.74%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	2.80%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.87%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.87%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.93%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.93%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.93%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental
3300004774	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M	Environmental
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300007544	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3	Environmental
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental
3300009419	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020527	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)	Environmental
3300020562	Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)	Environmental
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental
3300024346	Whole water sample coassembly	Environmental
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental
3300027631	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)	Environmental
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027760	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)	Environmental
3300027777	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental
3300028393	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300034018	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021	Environmental
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NpDRAFT_102967122	3300000929	Freshwater And Marine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGSSVVRRTGRGG*
B570J29032_1097268642	3300002408	Freshwater	MTEKKNPNPFINMANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG*
B570J40625_10002550020	3300002835	Freshwater	MTEKKNPNPFINLANEAKKKNTPMINGKKTEQKAPKPSKGFGGSSVVRRTGRGG*
B570J40625_10005030713	3300002835	Freshwater	MTEKKSKNPFINMANDAKKNNAPMIAGKKGEQKAPKPNTKGFGGASVVRRTGRGG*
B570J40625_1003596563	3300002835	Freshwater	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGASVVRRTGRGG*
Ga0065166_103607502	3300004112	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPNKGFGGASVVRRTGRGG*
Ga0065167_10632322	3300004693	Freshwater	MTEEKKNPNPFINLANAVKKNTVPTTKTKQTKLPKPNTKGFGGASVVRRSGRGG*
Ga0007794_101382311	3300004774	Freshwater	MTEEKKSKNPFINMANEAKKKNNIPNAKHLEGKMPKVNTKGFGGSSVVRRTGRGG*
Ga0007792_101252733	3300004805	Freshwater	NKGKKMTEEKKNPNPFINLANAVKKNTVPTTKTKQTKLPKPNTKGFGGASVVRRSGRGG*
Ga0049081_100055853	3300005581	Freshwater Lentic	MTEEKKSPNPFINMANEAKKNSPRLPGSKTIQQKAPKPNKGFGGASVVRRTGRGG*
Ga0049080_102387851	3300005582	Freshwater Lentic	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGAS
Ga0049080_102471881	3300005582	Freshwater Lentic	MTEEKKSPNPFINMANEAKKKNAPMITSKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0078894_106946962	3300005662	Freshwater Lake	MTEKKSPNPFINMANEAKKNSPRLPGSKTTQQKAPKPSKGFGGASVVRRTGRGG*
Ga0078894_107618881	3300005662	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPILTGKKSEQKVPKPSKGFGGSSVVRRTGRGG*
Ga0078894_109231062	3300005662	Freshwater Lake	MTEKKNPNPFINMANEAKKKNAPMITAKKGEKKTPKPSKGFGGASVVRRTGRGG*
Ga0079957_100003177	3300005805	Lake	MTEEKKSSNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0079957_101319614	3300005805	Lake	MTEEKKSKNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0070744_100005053	3300006484	Estuarine	MTEKKNPNPFINLANEAKKKNTPIINGKKTEQKAPKPSKGFGGSSVVRRTGRGG*
Ga0070744_100186115	3300006484	Estuarine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPNKGFGGASVVRRTGRGG*
Ga0070744_101024422	3300006484	Estuarine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPNKGFGGSSVVRRTGRGG*
Ga0075464_109301551	3300006805	Aqueous	MKEPKKSSNPFINMANDAKKNSPRLPMAKTTTQKMGKPSKGFAGAPVRKTGRGG*
Ga0102861_10920803	3300007544	Estuarine	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTG
Ga0102817_10336301	3300007555	Estuarine	KMTEKKNPNPFINLANEAKKKNTPTLTGKKSEQKVPKPSKGFGGSSVVRRTGRGG*
Ga0102817_10670681	3300007555	Estuarine	INLANEAKKKNTPMLTGKKSEQKVPKPNKGFGGSSVVRRTGRGG*
Ga0102828_10482512	3300007559	Estuarine	MTEKKNPNPFINLANEAKKKNTPILTGKKSEQKVPKPNKGFGGSSVVRRTGRGG*
Ga0102828_11816892	3300007559	Estuarine	MTEKKNPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0102863_11636002	3300007622	Estuarine	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0102863_12375921	3300007622	Estuarine	MTEKKNPNPFINMANEAKKNSPRLPDAKATKQKAPKPNKGFGGASVVRRTGRGG*
Ga0114340_10711912	3300008107	Freshwater, Plankton	MTEEKKSPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114343_10091403	3300008110	Freshwater, Plankton	MTEEKKSPNPFINMANEAKKKNAPMITSKKSEQKAPKPNKGFGGASVVRRTGRGG*
Ga0114364_10970281	3300008267	Freshwater, Plankton	KNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114364_11151422	3300008267	Freshwater, Plankton	MTEKKSPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114364_11167292	3300008267	Freshwater, Plankton	MTEEKKSPNPFINMANETKKKNAPMITSKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114880_12022762	3300008450	Freshwater Lake	MTEKKNPNPFINLANEAKKKNSPMINGKKTEQKAPKPNKGFGGASVVRRTGRGG*
Ga0102831_10728212	3300008996	Estuarine	MTEKKNPNPVINLANEAKKKNTPIINGKKTEQKAPKPSKGFGGSSVVRRTGRGG*
Ga0102816_11534202	3300008999	Estuarine	MTEKKSSNPFINLANEAKKKNTPMLTGKKSEQKAPKPNKGFGGSSVVRRTGRGG*
Ga0102829_10742432	3300009026	Estuarine	MTEEKKNPNPFINMANEAKKNSPRLPNAKTSQQKAPKPSKGFGGSSVVRRTGRGG*
Ga0102829_12796192	3300009026	Estuarine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPNKGFGGSSVVRRTGRGG*
Ga0102829_13336991	3300009026	Estuarine	NPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGSSVVRRTGRGG*
Ga0114973_1000338016	3300009068	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114973_103002402	3300009068	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPSKGFGGSSVVRRTGRGG*
Ga0114962_1000006976	3300009151	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKSPKPSKGFGGASVVRRTGRGG*
Ga0114962_1000044320	3300009151	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKAAKQKVPKPNKGFGGSSVIRRTGRGG*
Ga0114980_103473902	3300009152	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPMINGKKTEQKAPKPNKGFGGSSVVRRTGRGG*
Ga0114968_1000444514	3300009155	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKTAKQKVPKPNKGFGGSSVIRRTGRGG*
Ga0114977_105812742	3300009158	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPIIGGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114978_100512404	3300009159	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114978_102268463	3300009159	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMIAGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114978_104170552	3300009159	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPAITGKKAEQKAPKPSKGFGGASVVRRTGRGG*
Ga0114975_104599111	3300009164	Freshwater Lake	EKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGASVVRRTGRGG*
Ga0114959_100151912	3300009182	Freshwater Lake	MTAEKKSPNPFINLANQAKKNNTVGIKGKQVQTKMPKPFKGFGGSSVVRRTGRGG*
Ga0114971_106006482	3300009185	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKTAKQKVPKPNKGFGGSSVIRRT
Ga0114982_12791052	3300009419	Deep Subsurface	MTEKKNPNPFINMANEAKKKSAPMITAKKGEKKTPKPSKGFGGASVVR
Ga0133913_1046407710	3300010885	Freshwater Lake	MTEKKNPNPFINLANEAKKKKTPMLTGKKSEQKVPKPSKGFGGASVVRRTGRGG*
Ga0133913_129279343	3300010885	Freshwater Lake	MTEKKSPNPFINLANEAKKKNTPVITGKKSEQKVPKPNKGFGGSSVVRRTGRGG*
Ga0164293_100869913	3300013004	Freshwater	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPNKGFGGASVVRRTGRGG*
Ga0164293_103608792	3300013004	Freshwater	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSRGFGGASVVRRTGRGG*
Ga0164294_100969142	3300013006	Freshwater	MTEKKNPNPFINLANEAKKKNAPTINGKKTEQKAPKPSKGFGSASVVRRTGRGG*
Ga0164295_105190301	3300013014	Freshwater	MTEKKNPNPFINLANEAKKKNAPMVNGKKTEQKAPKPSKGFGGASVVRRTGRGG*
Ga0181344_10449612	3300017754	Freshwater Lake	MTEKKSPNPFINMANEAKKKNSPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0181344_11524512	3300017754	Freshwater Lake	MTEKKSSNPFINLANEAKKKNTPMLTGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0181349_10517122	3300017778	Freshwater Lake	MTEEKKSSNPFINMANEAKKKNAPMITSKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0207193_10221992	3300020048	Freshwater Lake Sediment	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPNKGFGGASVVRRTGRGG
Ga0207193_11280276	3300020048	Freshwater Lake Sediment	MTEDKKSKNPFINMANEAKKNNPAFITGKKSEQKVPKPSKGFGGSSVVRRTGRGG
Ga0207193_18831832	3300020048	Freshwater Lake Sediment	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGA
Ga0211732_12271521	3300020141	Freshwater	MTEKKNPNPFINLANEAKKKNTPMLTGKKAEQKAPKPSKGFGGSSVVRRTGRGG
Ga0211736_102210471	3300020151	Freshwater	MTEKKNPNPFINMANEAKKKNAPMMTGKKAEQKAPKPSKGFGGAS
Ga0211736_107692832	3300020151	Freshwater	MTEEKKSPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0211734_104244822	3300020159	Freshwater	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGASVVRRTGRGG
Ga0211733_108196512	3300020160	Freshwater	MTEKKNPNPFINMANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG
Ga0211733_108290292	3300020160	Freshwater	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPNKGFGGASVVRRTGRGG
Ga0211726_108656332	3300020161	Freshwater	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKSPKPSKGFGGASVVRRTGRGG
Ga0211735_107464922	3300020162	Freshwater	MTEKKSPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0211729_108624715	3300020172	Freshwater	MTEKKSKNPFINMANDAKKNNAPMIAGKKGEQKAPKPNTKGFGGASVVRRTGRGG
Ga0208232_100036918	3300020527	Freshwater	MTEKKNPNPFINLANEAKKKNTPMINGKKTEQKAPKPSKGFGGSSVVRRTGRGG
Ga0208597_10170125	3300020562	Freshwater	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGASVVRRTGRGG
Ga0194048_102134632	3300021519	Anoxic Zone Freshwater	MTEKKSPNPFINLANEAKKNSPRLPDAKTAKQKVPKPNKGFGGSSVVRRTGRGG
Ga0244775_100369945	3300024346	Estuarine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPNKGFGGSSVVRRTGRGG
Ga0244775_100388392	3300024346	Estuarine	MTEKKNPNPFINLANEAKKKNTPIINGKKTEQKAPKPSKGFGGSSVVRRTGRGG
Ga0244775_100900302	3300024346	Estuarine	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPNKGFGGASVVRRTGRGG
Ga0244775_105688603	3300024346	Estuarine	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGSSVVRRTGRGG
Ga0244775_107479612	3300024346	Estuarine	MTEEKKSPNPFINMANEAKKNSPRLPGSKTIQQKAPKPNKGFGGASVVRRTGRGG
Ga0244775_115654792	3300024346	Estuarine	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPSKGFGGSSVVRRTGRGG
Ga0208923_10100824	3300027320	Estuarine	MTEKKNPNPFINLANEAKKKNTPILTGKKSEQKVPKPNKGFGGSSVVRRTGRGG
Ga0208133_100025116	3300027631	Estuarine	MTKKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPNKGFGGASVVRRTGRGG
Ga0209599_102282281	3300027710	Deep Subsurface	MTEKKNPNPFINMANEAKKKSAPMITAKKGEKKTPKPSKGFGGAS
(restricted) Ga0247836_10604765	3300027728	Freshwater	MTEKKNPNPFINLANEAKKKNTPAITGKKVEQKAPKPSKGFGGASVVRRTGRGG
Ga0209190_100068936	3300027736	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKTAKQKVPKPNKGFGGSSVIRRTGRGG
Ga0209189_11197972	3300027747	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKAAKQKVPKPNKGFGGSSVIRRTGRGG
Ga0209596_11936632	3300027754	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMMTGKKAEQKAPKPSKGFGGASVVRRTGRGG
Ga0209598_103435182	3300027760	Freshwater Lake	KMTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGASVVRRTGRGG
Ga0209829_102403513	3300027777	Freshwater Lake	MTEKKSSNPFINMANEAKKNSPRLPDAKAAKQKVPKPNKGFGGSSVIRRTGR
Ga0209500_1000078428	3300027782	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPMINGKKTEQKAPKPNKGFGGSSVVRRTGRGG
Ga0209500_100185484	3300027782	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0209500_101209432	3300027782	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMIAGKKAEQKAPKPSKGFGGASVVRRTGRGG
Ga0209500_103416561	3300027782	Freshwater Lake	MTEKKNPNPFINLANEAKKKNAPMINGKKTEQKAPKPSKGFGGASVVR
Ga0209107_100092124	3300027797	Freshwater And Sediment	MTEEKKSSNPFINMANEAKKNSPRLPSAKAAQQKAPKPNKGFGGASVVRRTGRGG
Ga0209229_100888282	3300027805	Freshwater And Sediment	MTEKKNPNPFINLANEAKKKNTPMLTGKKSEQKVPKPSKGFGGSSVVRRTGRGG
Ga0209777_101078236	3300027896	Freshwater Lake Sediment	MTEEKKSPNPFINLANQAKKNNLPAIKGKPTQSKVPKPSKGFGGSSVVRRTGRGG
Ga0209191_10159113	3300027969	Freshwater Lake	MTEKKNPNPFINLANEAKKKNTPIIGGKKAEQKAPKPSKGFGGASVVRRTGRGG
Ga0304728_10529271	3300028393	Freshwater Lake	SPNPFINLANQAKKNNTVGIKGKQVQTKMPKPFKGFGGSSVVRRTGRGG
Ga0315909_101144813	3300031857	Freshwater	MTEKKNPNPFINLANEAKKKNSPMINGKKTEQKAPKPNKGFGGASVVRRTGRGG
Ga0334985_0570465_99_263	3300034018	Freshwater	MTEKKNPNPFINLANETKKKNAPMITAKKGEKKTPKPSKGFGGASVVRRTGRGG
Ga0335005_0632428_12_179	3300034022	Freshwater	MTEEKKSPNPFINMANEAKKNSPRLPGSKTIQQKAPKPSKGFGGASVVRRTGRGG
Ga0334995_0654386_446_598	3300034062	Freshwater	KNPNPFINLANEAKKKNTPMLTGKKSEQKAPKPSKGFGGASVVRRTGRGG
Ga0335036_0406334_146_310	3300034106	Freshwater	MTEKKNPNPFINLANEAKKKNTPMSTGKKSEQKVPKPSKGFGGASVVRRTGRGG
Ga0335007_0793492_1_159	3300034283	Freshwater	EKKSPNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG