Scaffold Ga0244775_10030302

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10030302
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4821
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F014017	Metagenome / Metatranscriptome	266	Y
F016396	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1003030212	F001280	GAGG	MCIECGCESLGSETGIVPVTITDASRDGESGLTLAMTSTPEQTRQFINE
Ga0244775_1003030215	F006846	AGGA	MKMLIEFVERYLMRPKRLREAIESVVHENDELLRILKQYEEDDTPTNLTWAEGDTWYGWTYNSNAKRYYFDDIGNKSLMGLWEDQWAREKEVEESK
Ga0244775_100303022	F016396	GAGG	MRKSERLRLLEIHMVRLEMMVELYSQSLTNLLESQGLKGPTDLDAGKWYKAKLDTKDTE
Ga0244775_100303028	F014017	AGG	MDKIEDYLDEKHRKKIADEIRYLELPPEWRPQEVIRYVVRIIEKSNG