Scaffold Ga0244775_10029768

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10029768
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4871
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F019324	Metagenome / Metatranscriptome	230	Y
F066789	Metagenome / Metatranscriptome	126	Y
F099311	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002976813	F019324	AGGAG	MLGYELSDQEDMVTAIQSALTTINPDDDPWLYNNLRMAESFLQGLWAEGYFD
Ga0244775_1002976814	F007691	AGGA	LNTIDDLINKIYEDNHSHLDFDENMGGEACFCNVHITLKTIAFYAGIEVGE
Ga0244775_100297682	F066789	N/A	MTHTCNYQLDLDGQVTCTVCGAMDDDMQSIFETQVDFE
Ga0244775_100297687	F099311	AGGAG	MAAKKAKAKIYPYLEMWDTRYGKSERIVLRKNGRFVDNTSLTALKQGARVTSR