Scaffold Ga0244775_10021564

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10021564
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5856
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F020910	Metagenome / Metatranscriptome	221	Y
F023106	Metagenome / Metatranscriptome	211	Y
F063708	Metagenome	129	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1002156413	F063708	N/A	MDLETFKQYINLHLISLEQDLEENPASIHVVDIEGQIYATKHLMEVLNEH
Ga0244775_1002156414	F020910	GGTGG	MWSKYTFICDPDECDALVEFTARDGFGFPLGVVEMKCPCGRMLNYISYEEAYAPIITDVSKVTPTKLVKINTNPYN
Ga0244775_1002156415	F001507	AGG	MTQTTYKPYTIDELLTAIYEDNFSHFEFMENMNGGDCDCFLHQAMKLVVSYVE
Ga0244775_100215646	F023106	GGA	MRISRRVTEEEKVANKIGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKDTKEGTNYGKNNF
Ga0244775_100215648	F080058	AGAAGG	MNEYTVELIHEPSGAYMNFIVFSDVKQDEVALAKEIWSDMSVVVLDYVEGEE