Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10010688 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10010688 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8741
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (88.46%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

8741

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (88.46%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F003379	Metagenome / Metatranscriptome	490	Y
F004051	Metagenome / Metatranscriptome	455	Y
F005741	Metagenome / Metatranscriptome	391	Y
F008132	Metagenome / Metatranscriptome	338	Y
F019325	Metagenome / Metatranscriptome	230	Y
F021481	Metagenome / Metatranscriptome	218	Y
F024319	Metagenome / Metatranscriptome	206	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_100106881	F003379	GGAG	MKKLSALLMLIATAILSGALLNRFLNWAGNIEIFDFDLNEDIDNEQF
Ga0244775_1001068810	F008132	AGG	MMSKWDTIQADVQDQYAHLAEEEMYEQLMAEEEDVFGFTKAIQIDHLTDEQLDEVFNMFGDK
Ga0244775_1001068812	F085708	AGGA	MNRLLTTFVQLALAIPALYMGRMMWREIVADFREWDRSH
Ga0244775_1001068819	F002245	AGG	MTNLMKVPHTITFEAIIDLDKIPANMLPTLIALPENAIQEMCKGATLNALSLSNTLEVANTGNYWAELTVKDKE
Ga0244775_1001068821	F004051	AGGA	MTVGNKTYQVGDLFTTLKSKETGVISEIIQNASGSVRVRLTTDSGDRWTTVSAESMA
Ga0244775_1001068823	F021481	AGG	MSPILDTAKGRFYKKGDVFTTGKSGITGTITEIISIRPTLTKLGLNTENGLRWAMVKIGA
Ga0244775_1001068824	F005741	GAG	MKNRYRVEIYDANKMNDVTIYSDSGVDKDYLTELVFSNLRKFSGRVNAYVFDNVKKKKTTAMFLDEAVVTKYKVI
Ga0244775_100106887	F019325	AGGAG	MTQLTETLFSTIVHEYHNGGVKSSYGLNAYTRKEVLKYLISSPSCYCIECISKEVK
Ga0244775_100106888	F024319	AGGAGG	MTNRIWESRNDYMTPAYYVACASGCGRVTAWTTCVMCGGNYAEHALVNVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10010688

Overview

Ecosystem & Geography

Associated Families

Sequences