Scaffold Ga0244775_10006587

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10006587
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11553
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F010684	Metagenome / Metatranscriptome	300	Y
F011487	Metagenome / Metatranscriptome	290	Y
F017133	Metagenome / Metatranscriptome	242	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000658715	F001507	AGG	MTQTTYKPYTIDELVTLIYEDNLSHFEFMENMNGGDCDCSLHTTMNTIVSYWGE
Ga0244775_1000658723	F011487	AGGAG	MANMYEDEMFDNYYATTCPQCHENSVDEYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY
Ga0244775_1000658734	F017133	AGGTGG	MSNSTFERAKGFATVSDYPRGLMNLCPCGQVVLAPALYHEGFVWWENPNKCKELFEGVK
Ga0244775_1000658735	F081245	GGA	MIDYVKQIELNNYLADEQIDPLAQMLDELIKKGGYTK
Ga0244775_100065877	F010684	AGG	LNEYKVEIIFEPTGDYMTFRYEAESDNEADLCNEILNQLSIVSWKEEQ