Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10004774 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10004774 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13923
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13923

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F039641	Metagenome / Metatranscriptome	163	N
F097357	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000477410	F031872	GAGG	MVESLVVDEWIFDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGISQLYIATITPEV
Ga0244775_1000477412	F033435	GGAG	VESLVSTEHNLSNSIFDSIPKLEGRPNHVVDIERFIGAPGSFTFREPKASDLFPRPEVQKALKIAFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVADFAKAFPIDFTAAVDEVPND
Ga0244775_1000477413	F097357	N/A	VRHLKRHPRETDLSLDELAEVAWAAEVWDNQLVEIVKAVMSVISKRTF
Ga0244775_100047743	F039641	N/A	MIPAAYSTALKNAIQAYSYADRVAIWRTVNQADGIGGVSQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDIEVRADDRIYTSGNPQNLSPYYECIGSDYGHTNAVSQTIALRARTNG
Ga0244775_100047745	F001733	AGAAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLSELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGTGVNALKVGK
Ga0244775_100047746	F006623	AGGTGG	MNLQNYRLEPNPNVPGDWIVFGDIYDNEGNLLGTFGSDGTSVFGWWVLQDAEFQQSYSSQFSAIMAQEIVAGTAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10004774

Overview

Ecosystem & Geography

Associated Families

Sequences