Scaffold Ga0244775_10004418

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10004418
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14577
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F003964	Metagenome	459	Y
F009743	Metagenome / Metatranscriptome	313	N
F010530	Metagenome / Metatranscriptome	302	Y
F033005	Metagenome	178	Y
F048950	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000441812	F010530	GGAG	MIDYALILNANYPGTQWSLDGETYDGLTWLDETPKPSQAELDAAWPQVDYNNQIAAVETTRRIQYEAQSDGLFFEWQRGTNTKEAWEAAVQAIKDANPYPPAPTKKK
Ga0244775_1000441815	F001872	N/A	VATAKTNPNARPYTGNSDGASAGPRAGMNEWIKQALVLSNGALWNNGSWGVRDMRGSAGTLSVHATGRAVDLSYRKSERHENASRKGALEFIDIVVANANTLGVECVLDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0244775_1000441822	F048950	GAGG	MTLEELITNIERLQAVYNSMVDPEQHEARQYVRWAIKHLADKTYMAAL
Ga0244775_1000441824	F033005	N/A	MTRKLTEHDTAIYKQARAELLRDQPLCHWCKKNPACELDHLVESDKGGTLEDGYVAACKSCNSARGASYRNRKLANAKQNREKAINDFLYANEMPP
Ga0244775_100044187	F009743	AGGAG	MKIKLQLKRTPDSAPEFYYTNLFVVTEWERLERRNVQQLSANPLYSDYACWMHTILKIKGEQVGDNWREWLSKNPDIDILPVLDETDPNPTDAAPTAAN
Ga0244775_100044188	F003964	GGAG	VAEVSAKIEVVGLKEALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPSNVPLSGMARNWSTRSGFKMLPWIPGMKQKIAAKINTRNIKEYGGNKSNVGTFVIQWQGATGTMFDTSMAGSLGRALTSRYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMSEANRETA