Scaffold Ga0244775_10003389

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10003389
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16955
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (88.10%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F023106	Metagenome / Metatranscriptome	211	Y
F024314	Metagenome / Metatranscriptome	206	Y
F026557	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000338918	F000684	AGG	MSINGYTYQIGDLFTTSKTGVTGRIAGFTPMSNKVTRVSLVLSNGSRRLAMVKTSK
Ga0244775_1000338920	F011487	AGG	MTFENDQMLDEYYATTCPSCRENAVDEYEDKCTHCLLEEMSAHYNEDIALEMSLGLDY
Ga0244775_1000338924	F007263	AGGAG	MLNIIDKTEYYEIADEQHFCCDESQFKYYCEAHLEFMGCYFCQFDYDKDCEEQH
Ga0244775_1000338928	F026557	AGGCGG	MINSVMTIPCDECNSTGLIFFGNDNDFDVETCNCDFGAEQDFFLFNTPEAN
Ga0244775_1000338936	F024314	GGAG	MEEKLTPEQVQAILLFQIEQKLRNTIALQVESKFHGKYHNESHEIAQFIRNMS
Ga0244775_100033894	F023106	GGA	MRISRRVTEEEKVANKLGNMVSDLRVDLELVGEYLAKSQPYVVYNRLQVIAESAKETKEGTNYAYNNI