Scaffold Ga0244775

Basic Information
Taxon OID	3300024346 Open in IMG/M
Scaffold ID	Ga0244775_10002339 Open in IMG/M
Source Dataset Name	Whole water sample coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024346 Open in IMG/M

Scaffold ID

Ga0244775_10002339 Open in IMG/M

Source Dataset Name

Whole water sample coassembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20812
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (82.35%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

20812

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (82.35%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Columbia River Estuary
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Columbia River Estuary

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023351	Metagenome / Metatranscriptome	210	Y
F039142	Metagenome / Metatranscriptome	164	Y
F045097	Metagenome / Metatranscriptome	153	Y
F059006	Metagenome / Metatranscriptome	134	Y
F060913	Metagenome / Metatranscriptome	132	Y
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N
F076103	Metagenome / Metatranscriptome	118	Y
F092056	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000233910	F039142	GGAG	MTDFVPYTHPAVTRVYSTKDLVEQLFSNLRILAGTADKNSYIVGYLSACLADIANKGVDELTHIVDYTNQRIEADEYNKRADARRDEWANSALAN
Ga0244775_100023392	F092056	AGGA	MIEQQVLARGLANAPDAFDYIYECISGSHGNEIREYVDYLYQSVSIDHRLHPDDDFEDIINRVLDDLGA
Ga0244775_1000233920	F076103	GGAG	MRCTINNDKWEDVNKVYFVHSLQSRPNSTGVALSLEDENGNIHERVVAFHQIEWIEE
Ga0244775_1000233922	F059006	AGGA	MFSDNERAEIESVKAIVQKKLRELLSDLPADTYPFFKECILTGECFSPLFLDEEVHDWDVYLKDVVTAERFEFFVMSDTPTLNEVAEVTSEYRSITKVNGKLITANGITFKNGLQVVTQSCKKHRTTFDFVHTMPYFDMATQQLFISRQQYDSIKNKKLIKNPKFPQFNKSREDQFLQRGWSVA
Ga0244775_1000233932	F023351	GGAG	MVKEAKGGVFAPTDIHVIRRALHAYLIDIQRIEGFSDRDPHPDLNAVASLLHRLGRIDG
Ga0244775_1000233935	F045097	GGA	MTKDDIKEKAIEAIPYVAVLGIAALTVYGITKIVQAVNDLDYPLDFGYDEYLTGLSKNSRED
Ga0244775_1000233936	F070111	AGGAG	VTKISVELDSEQFDKVVVEELIRTRQTFLNDLGANNHVFVWGDQEADDIEIQKHIDAAELLLKWFSTKDQLAEMGITDD
Ga0244775_1000233944	F068832	AGGA	MSEVVEKNMFLEGLKWIGTACVIVAATCRAFEFHTVDLILSIFGAALWGYAAYEMKDKPLIVVNGFITAILLYGVVK
Ga0244775_1000233946	F060913	AGGA	MKMIKVYQIQLTDAEIAAVNSGETSDRIKAYFGRSFEGTFKAENFQYYTHVANVDTNDMEIAFEAMNLWEESIYFEDIFKLASCSSMSVGDILDVDGTLFRCASMGFDEIKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244775_10002339

Overview

Ecosystem & Geography

Associated Families

Sequences