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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10001439 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27784 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (25.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011488 | Metagenome / Metatranscriptome | 290 | Y |
| F012346 | Metagenome | 281 | Y |
| F033041 | Metagenome / Metatranscriptome | 178 | Y |
| F044502 | Metagenome | 154 | Y |
| F092059 | Metagenome | 107 | N |
| F092066 | Metagenome / Metatranscriptome | 107 | Y |
| F099314 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000143924 | F012346 | N/A | MIFKFYSRIDKDQETIGRIVTTSRLQAAKLFAERKQLPLKEFLKVFGVTTIL |
| Ga0244775_1000143934 | F092066 | N/A | MKIDGGALEFFQTIPDDMLTQIALHDRDSLERLCVALTLDVQLIIEEAERKNSKKKKKNLAS |
| Ga0244775_1000143940 | F044502 | N/A | MKERGGFVTPLSYIDDMMKEQDKFNGLSRGQVKQIIRRNMITRVKSSKKVYDRKKEKRNLES |
| Ga0244775_1000143941 | F033041 | N/A | MEKIKINSNFKFTFDSDVELRRAELSGYIESYDMVRICVKQIDNGNQVDFPIKTREDYFETVASLNERSNEYDMVEIYPSTHSFDMYDYI |
| Ga0244775_1000143944 | F099314 | GGA | MSEKKGLTGKLLYDFNTAKAVYVKNKDGRFVRVTERDFRSYNGDRWIFEKVNDEWQYTPYNGPLYFHNTNRKCKCPVGEGKIQYMVNKPWVSVRRPHERYLED |
| Ga0244775_1000143945 | F011488 | GAGG | MSMTNEELIEELYHKAHAKGFFHELHDRVKEVKQNGIKECEHRLVQKAYSELKKIKLAQPASQN |
| Ga0244775_1000143947 | F092059 | N/A | MWLQNNFKSIMNVGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |