Scaffold Ga0244775_10000923

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000923
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35322
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (23.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F016795	Metagenome / Metatranscriptome	244	Y
F032304	Metagenome / Metatranscriptome	180	Y
F044418	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000092314	F044418	N/A	MRIEERMIDYAQKWYKVNDLETEKKNGSDLYLRVNDNVFTEVSHCDIRQKAILWLQSELEGVMYS
Ga0244775_1000092315	F014724	AGGAG	MKEELKAIRCAIDGVADEILEDRRHANMGDLVKAMENISSTLCTISYDLKDLVEAKKFQNELTTALR
Ga0244775_1000092330	F032304	N/A	VFIWCRGYVVSMNHSESGTRKVLKQLRKCAEITEIKQTAKGHMVLADNGAQILVHLSARAFHPLRRWLKANTSLKSLKF
Ga0244775_1000092338	F016795	AGGAG	MTEELEKFMTEELGIIDRLGFEPLEGAELFLDVGNNVWTFNQIINEFKNK