Scaffold Ga0244775_10000814

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000814
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37928
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047056	Metagenome	150	N
F048000	Metagenome / Metatranscriptome	149	N
F048315	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000081443	F048000	N/A	MDDLEINLARGDRAKLLLEDELLNEMLKKIEDDCYLEIRSSKLMEEPIREQAYLLLKTVDILRTKLRSVMDTGKMAEVALVRRRGRPPNK
Ga0244775_1000081450	F048315	N/A	MAAYGRGDYSGGRYSFGAYLGELAIVDASTVVVSGEKIKDAQFEIFSSSTVSVDAVKIASAGVVIVDTSVMTAAGGLDAVGAVFIIDTSSLDIQYNRIQHFSAAINDTSSVVINARKKWETESDVSEIWTTVSV
Ga0244775_1000081461	F047056	N/A	MSSLLFTLVASSKDKTEYRCVRWAWTGDVYNRKVVCLEWQKVDK