Scaffold Ga0244775_10000787

Overview

Basic Information

• Taxon OID: 3300024346
• Scaffold ID: Ga0244775_10000787
• Source Dataset Name: Whole water sample coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38480
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (22.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003188	Metagenome / Metatranscriptome	502	Y
F061285	Metagenome / Metatranscriptome	132	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244775_1000078711	F003188	AGTAG	MIEPRKKVRQVLFSIHQLSYRIKEKSPSNEHMNKKIFIEVLEQLKLIEERRDFMEEEIGMDMTQYEDQFFSVIENLFKLAFNKQQLGLIQLYLYQLVPDKEWDGTITIELGKEEKVVNFKTPEDVWNTINLFTNG
Ga0244775_1000078716	F061285	N/A	MTKKKTSKLSTFKKNKPLERKVADDLVRLHERNEKLREKEIGTSFLDLF
Ga0244775_1000078721	F083269	N/A	MPIKKVSVTKTSQYYVDGEGTVDRDRIVTLSHDWTERDITLFKKLAKQGGTCRLQGLKYTIIPGEKITTSKGWADAGAAPMPGPEN