Basic Information | |
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Taxon OID | 3300024346 Open in IMG/M |
Scaffold ID | Ga0244775_10000787 Open in IMG/M |
Source Dataset Name | Whole water sample coassembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38480 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (22.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003188 | Metagenome / Metatranscriptome | 502 | Y |
F061285 | Metagenome / Metatranscriptome | 132 | Y |
F083269 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0244775_1000078711 | F003188 | AGTAG | MIEPRKKVRQVLFSIHQLSYRIKEKSPSNEHMNKKIFIEVLEQLKLIEERRDFMEEEIGMDMTQYEDQFFSVIENLFKLAFNKQQLGLIQLYLYQLVPDKEWDGTITIELGKEEKVVNFKTPEDVWNTINLFTNG |
Ga0244775_1000078716 | F061285 | N/A | MTKKKTSKLSTFKKNKPLERKVADDLVRLHERNEKLREKEIGTSFLDLF |
Ga0244775_1000078721 | F083269 | N/A | MPIKKVSVTKTSQYYVDGEGTVDRDRIVTLSHDWTERDITLFKKLAKQGGTCRLQGLKYTIIPGEKITTSKGWADAGAAPMPGPEN |
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