Scaffold Ga0255062

Basic Information
Taxon OID	3300024345 Open in IMG/M
Scaffold ID	Ga0255062_10000013 Open in IMG/M
Source Dataset Name	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25683
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (24.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25683

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (24.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

New Zealand: Palmerston North, Manawatu-Wanganui

Coordinates

Lat. (^o)

-40.3794

Long. (^o)

175.6106

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009724	Metagenome / Metatranscriptome	314	Y
F046128	Metagenome / Metatranscriptome	151	Y
F057035	Metagenome / Metatranscriptome	136	Y
F064301	Metagenome / Metatranscriptome	128	Y
F075545	Metagenome / Metatranscriptome	118	Y
F079361	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255062_1000001318	F009724	N/A	MENNVFFTKFETIGLTKDEAMKNSNLNLRVDATQAYKKWAKENVTNEDNVKEWMIEYLKKKKFNMPNDGAYIVLQSAVLDSRERPYKVEKPKYEARTHTPVRVYVGRAQDTGEEIFTEKTSKAAEQAAKEFVIENHVGVDLVIETRMKEKNSLYAKVNYVPSKGTQSCKLLVFGYKVMD
Ga0255062_100000132	F046128	GGA	MKKYLVRFTTKSGDYDKEWCYANSEEEAAQNIQDEHWNIASIDMVSEL
Ga0255062_1000001343	F075545	N/A	MIQLVVNVELLREIDERKLINAYARFMYNDEKDTTDDVQIKENLIQLLDWDKNGDNGLRVYCSKFEKIKKKDWEFLINFIKENYHEIKSIAYTPNKERKLKSIKVINDAIETKKKHNIERFTDENYQVSGRGKKARPCIYEGKEYKSRQECMYKEGLTKYQIWKYLKETNQI
Ga0255062_1000001347	F079361	N/A	MIYFTVAKNDCGYLIDSVSESCEALKKKFPDEKIYKSDKPIVSIYVIKDQLNEVS
Ga0255062_1000001349	F064301	N/A	MAKKKAVISKSVILSPTKIPPVWQIGMLFPDGKKISKPKCTLNEIFNTYFIGLDKYLNKGFNAEELLELYQKTYYNKGIKVQINYIDSWGHLWKGKVAWPRESKFIDFLNNRLNG
Ga0255062_1000001352	F057035	GAGG	MTEKEFLEKRVPIWLEGEDLHISTPSNMDKNDMHVFLCKKYGYNALFAIRGYYWPGSHVCLYIGEYETPNCTILVTNYIFQYFPDIKYIGFGCHIGKPGEIWRPKVIVARNPSCLNNDIFSKQTEESV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255062_10000013

Overview

Ecosystem & Geography

Associated Families

Sequences