Scaffold Ga0244777_10436438

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10436438
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 811
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F073544	Metagenome / Metatranscriptome	120	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_104364381	F080048	GAGG	MEKILCYCCNKTKNKLNLKKSVLIPINLFMCETCISSKFEPRWVIILAGR
Ga0244777_104364382	F073544	AGG	VREYYEVINIVFIHEERLWGTCDSLGLYASKIKYQKDGIEYEDMFDNEEFTVMEEIVLEHSEEEN
Ga0244777_104364383	F000473	AGG	MEFINKDKDHFKHGINLWNGEPNKAVFYTKEMSTKIRELKKPVIDLQLDVVQYPEFLAVRLYEDNFIQYEGIKKEQVIDYVGKVKKLIESYGVRCELEGVPSARILRSN