Scaffold Ga0244777_10110076

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10110076
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1778
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011299	Metagenome / Metatranscriptome	292	Y
F029434	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_101100762	F011299	AGG	MMTRKDYVATAEILKFASDKTHPAVFSKIVNDFAEMFAKDNERFDVIRFHEASGYHVPKFTSR
Ga0244777_101100764	F007263	AGG	MIKEYLDENEFYFIKDEIKFCCDEQQFVHVCKAHGEQQGCYYCEFNPYENCECE
Ga0244777_101100766	F001562	GAGG	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEEE
Ga0244777_101100767	F029434	AGG	MKKYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAV