Scaffold Ga0244777_10067177

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10067177
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2301
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F011299	Metagenome / Metatranscriptome	292	Y
F080027	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100671771	F080027	N/A	HFSGEIVSAEPRPSIWYGDKTEAYTIEVRTGGLRNKFATIAVKVGE
Ga0244777_100671773	F011299	AGGA	MMTRKHFEATAEILKYMSNKTHPAVFSKTVNDFALMFAKENPNFNVNKFHEACGYSVPNFSSK
Ga0244777_100671775	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIDAKLLPTLINLPQSEIEKMCKGATLHALQIADVLTVANTGNSWAELTISEGN
Ga0244777_100671777	F004051	AGGA	MTVNGYSYKVGDLFTTLKSHKTGIIKEIIPNASGSVRVLLEMPTKETRWTTVVVGA