Scaffold Ga0244777_10044538

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10044538
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2833
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008577	Metagenome / Metatranscriptome	331	Y
F008695	Metagenome / Metatranscriptome	329	Y
F104912	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100445381	F008695	N/A	MKDKYKVDKVEHVWSEKEDRWLYIEYNEQRKVIGLNFMQGDDYDYFKKCWCYNDQGLTDFYESMLYTFPIEKASVSTIEFMNKCM
Ga0244777_100445383	F104912	GAG	MTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN
Ga0244777_100445384	F008577	AGAAG	MVLTNEEIKSIANRLDEIMGDNFHDAMWNTLSERDVDYNFEVSDEDILKIKQQLKRII