Scaffold Ga0244777_10011740

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10011740
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5558
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F023093	Metagenome / Metatranscriptome	211	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1001174010	F023093	N/A	TAIIVSGSPIASLAQGKKIVAGGKTVRITSQTYKPASAWVTLVVIDDNQ
Ga0244777_100117407	F092032	AGGAG	MNVNKGVVCLYGIGEGQVASLFVQSYSVSSGFNNTGTVVNESGLTVTARYDDRRSEITVEGVAKLTSVPQLGATLSFTAKTASAYPGGSASVSFSGVITKVDDRGSSKGFVSVSLTAESYEEITY
Ga0244777_100117408	F001055	N/A	MSNSIRHVVESTLATYLSTQTGLAGVQILTGDSNVTQTLPKAVVLCDSARAPGDLPEGLGNYECSVRVTLFSNADDTTLAVHRERCAALSDCMKSLDLIQAAFAATSGAAICYDVTYRSEDEGIDERSWATSFAFDVLTCLEPQ