NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10002138

Scaffold Ga0244777_10002138


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10002138 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13731
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Associated Families19

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F002598Metagenome / Metatranscriptome544Y
F003422Metagenome / Metatranscriptome487Y
F003690Metagenome / Metatranscriptome473Y
F004051Metagenome / Metatranscriptome455Y
F004431Metagenome / Metatranscriptome438Y
F006744Metagenome / Metatranscriptome365Y
F011299Metagenome / Metatranscriptome292Y
F017134Metagenome / Metatranscriptome242Y
F024319Metagenome / Metatranscriptome206Y
F038241Metagenome / Metatranscriptome166Y
F063705Metagenome / Metatranscriptome129Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1000213810F000263AGGMTISDDMFTDKESLELPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIAREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARNEA
Ga0244777_1000213811F063705GGAGMTKSSVFLEYMKLHLISLNQDWEATKNGEPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERVYE
Ga0244777_1000213812F038241GAGGMLGYTKEDLDQMINAVHDAKLFYILNSGVEQIDKDLLVDALLKTNDFLQGLWAEGYFD
Ga0244777_1000213813F000868AGGTGGMSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQLYADFRFAEMSDSNYLKGRFNLFYDLNPGDQYYLEWNEEL
Ga0244777_1000213817F001043AGGAGMSDYRDGFDDGYKFAREELMEKLSEIDINDIDSWILDRLSDMIEGGAL
Ga0244777_1000213819F003422N/AMPAKVRGQILCYGSHKKSPEIYRQLSVGPGTILFMTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEPMEESTVTTTPIPESYNSNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNGRQSQKRVTTLLSQIDTVRDIITEAYADSDDQETLRSIAEALDIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN
Ga0244777_1000213825F004051AGGAMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALIGA
Ga0244777_1000213827F002245AGGMSNLMKVPHTVEFEAVIDLDKIPANLLPALIALDTYSVTKMCKEATLHALGMSNVIPLANENNTWAEVTIKEGN
Ga0244777_1000213830F017134GAGGMELFTVACLNYEICGAQETFDSVEEYEIYGDDWTCGECYDSEEMEFYELGGWADSDALASAGHGMDEDY
Ga0244777_1000213832F011299AGGMTMTRKHFEAIAEILNYNSGKTHPAVFSKMVLDFAELCANENPNFNVTKFYEASNYVIPKLSTR
Ga0244777_1000213833F076101GGAGMYKITLSYDGNAPHWQQDYASEFDAWKDFFAFTDWGFANEFSTVNIYNSEMKCFTKHFYREERKVVTVK
Ga0244777_1000213834F002598AGAAGGMATKLYTIENLLIGKNYRSNSRHFSGEIISATARPEIWYGEKTEAFLIEVRTGGLRNKFATIAVKVGE
Ga0244777_1000213835F006744AGGAMNLDEFKAHVTETRKQSKIEAMSVLSATITKSTTTKEGATNGN
Ga0244777_1000213837F001562GGGGGMNKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELENE
Ga0244777_1000213839F003690AGGMIPTGFELSITNEYGFEFDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK
Ga0244777_1000213840F004431AGGAGMTITYSIWDGAQLLGVDFKATSADEMNKVVADLMKVSRNVVAHMRKVEM
Ga0244777_1000213842F024319N/AKMTNRIWESRNDYLVESDAKRLGYVSCSAGCGRVTAYSLCVMCGGNYAEHNLVGVR
Ga0244777_100021387F000852GGAMTTKREYLKQQGITVGVRGRFSGAAKVALAEAAAKGVTFTAEAPVKKAK
Ga0244777_100021388F000441AGGAGGMRMSDNYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQTDQI
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