Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10001249 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10001249 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18462
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (67.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18462

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (67.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F040105	Metagenome / Metatranscriptome	162	N
F045097	Metagenome / Metatranscriptome	153	Y
F059975	Metagenome / Metatranscriptome	133	N
F068832	Metagenome / Metatranscriptome	124	Y
F070111	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000124930	F059975	AGAAGG	MLTLRDINTATNSRDGDIYSDLHKDVYGFRPRDVTFSSTEEFDAEYERLVGILSVQIDEEKIRQDRNFAEFVCRVDGIMGLVKNCFDNAAAVAIICEAEGIDDEEMRFYGWESLEYRLDLKYGSIKKWLSE
Ga0244777_1000124931	F025748	GGAG	MEVFALLAEWDYEGSLLLGVYASEEDARSALVTDRFIDRYYIERRVVGAPIDFDPVRIDI
Ga0244777_1000124945	F068832	AGAAG	MLEIIKWFGTACVILAATCRAFEFHQVDLILSVIGAAAWGYAAFKMNDKPLMVVNGFITAILLYGVVK
Ga0244777_1000124951	F070111	GGA	MTKITVELDIEQFDTMVVNELIRTREAFLNDIGANNHVFVWDDQEADDIEIQKRIDALELLLKWYATPKQLANIGITDDQG
Ga0244777_1000124952	F045097	AGGA	MTKDDLKEKAIEAIPYVAVFGIAALAVYGITKIVKSINDMDFPLDWGHDHYLDTIGK
Ga0244777_100012496	F040105	GAG	MATRLQPKKFKYINEALDWATEVKNVDELRERVRAISTGNSILMRFLAWGVGYEQGPYNLPEGKTPIKNEGLPSGMSDTTITMEFRRILTLLPNGSAANVAQWRREEIWMQICQGVHPDEQVLLDAAKDKTILDVYPALADVLDSFLTGWKKPEVKKKKVSKKSEPLSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10001249

Overview

Ecosystem & Geography

Associated Families

Sequences