Scaffold Ga0244777_10000989

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000989
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21171
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030796	Metagenome	184	Y
F034542	Metagenome	174	Y
F061665	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100009891	F061665	N/A	KLIGKDKALAICEVCWLVPDEPPKRSDVTLQPAGVVESSIYTSTVPSA
Ga0244777_1000098933	F030796	GGCGG	VSQFTKNLELNTVVNSGLTDSSRRTGSTHFDQRRILDASGVVVVDSSSRTYAADGSYGISDYYPLTVNATGILQVDIRDQNSCGDVIILDSTGTEVMTAAPSKFSSRNSSVTQQRIASSGAYYAYIQLKGRSGTEYRIGIDVQVR
Ga0244777_100009898	F034542	AGGCGG	VSRRRGSDNFNLRPFKATNPAELPKTVKGSDNTKELNSPLPFKRRFRPALNTKDFSVTSEYDYASLWVRWRRGYELSMYSQQAYGGLTYSFKYFVSGTPGLGVFLPGMCFMYPTTRTDMRMHMVGIRPRDSFNFLNFGYSIVSVTDYDANTYAVRLSSNFGAPISFFTGEVLSNRFRADGTDKEYGFNNYTVTAVGINNVPVNPSYAPIFNTLFLSHGESTSWAVVDENTLAIPATGPPAVGEYLTTEMRSQCTCSDFLARENFNLYDASIRRKYPRTRPQNFDPGYYDAGVDGSPRLVDSSDNPGFARTFGFIYINQIYNIPSFSEATYSDPNFFYYQPKWCKHIYAAMWDMQRAYNQGVATGPWLPQPTDEPLNEYYREYFEKELARQTTFLKREKDLVWWQRYSPAKDDMPTHMMYPDMYNMMTKTLNAGDLAALNTLQGRSFEMFTIDEFNPFDPASFVVNTYDGGTYENGVLVNQPTNIFDGGQYLNGVIVPPAGFPSLINGGVY