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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F061665 |
| Family Type | Metagenome |
| Number of Sequences | 131 |
| Average Sequence Length | 46 residues |
| Representative Sequence | LSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPS |
| Number of Associated Samples | 106 |
| Number of Associated Scaffolds | 131 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 100.00 % |
| % of genes from short scaffolds (< 2000 bps) | 80.92 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.14 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (70.992 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (39.695 % of family members) |
| Environment Ontology (ENVO) | Unclassified (52.672 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (63.359 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.05% β-sheet: 0.00% Coil/Unstructured: 95.95% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.14 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 131 Family Scaffolds |
|---|---|---|
| PF12836 | HHH_3 | 28.24 |
| PF00210 | Ferritin | 0.76 |
| PF13392 | HNH_3 | 0.76 |
| PF04545 | Sigma70_r4 | 0.76 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 71.76 % |
| Unclassified | root | N/A | 28.24 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 39.69% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 6.11% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 5.34% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 5.34% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 5.34% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 3.82% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 3.05% |
| Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 3.05% |
| Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 3.05% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 3.05% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 2.29% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 2.29% |
| Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 1.53% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 1.53% |
| Benthic | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic | 1.53% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 1.53% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.53% |
| Marine Harbor | Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor | 1.53% |
| Wetland | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland | 0.76% |
| Freshwater | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater | 0.76% |
| Anoxic Zone Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater | 0.76% |
| Watersheds | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds | 0.76% |
| Freshwater | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater | 0.76% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 0.76% |
| Wetland | Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland | 0.76% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.76% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment | 0.76% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 0.76% |
| Mangrove Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment | 0.76% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001213 | Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly) | Environmental | Open in IMG/M |
| 3300001533 | Benthic freshwater microbial communities from British Columbia, Canada | Environmental | Open in IMG/M |
| 3300001748 | Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m) | Environmental | Open in IMG/M |
| 3300001934 | Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858 | Environmental | Open in IMG/M |
| 3300001963 | Marine microbial communities from Nags Head, North Carolina, USA - GS013 | Environmental | Open in IMG/M |
| 3300004125 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2) | Environmental | Open in IMG/M |
| 3300005582 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF | Environmental | Open in IMG/M |
| 3300005613 | Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment | Environmental | Open in IMG/M |
| 3300006025 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300006919 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 | Environmental | Open in IMG/M |
| 3300007234 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA | Environmental | Open in IMG/M |
| 3300007344 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007346 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 | Environmental | Open in IMG/M |
| 3300007538 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG | Environmental | Open in IMG/M |
| 3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
| 3300007541 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG | Environmental | Open in IMG/M |
| 3300007542 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG | Environmental | Open in IMG/M |
| 3300007640 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 | Environmental | Open in IMG/M |
| 3300007960 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG | Environmental | Open in IMG/M |
| 3300008021 | Estuarine microbial communities from the Columbia River estuary - metaG 1569A-3 | Environmental | Open in IMG/M |
| 3300009111 | Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 | Environmental | Open in IMG/M |
| 3300009152 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG | Environmental | Open in IMG/M |
| 3300009180 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG | Environmental | Open in IMG/M |
| 3300009184 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG | Environmental | Open in IMG/M |
| 3300009593 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome | Environmental | Open in IMG/M |
| 3300010297 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA | Environmental | Open in IMG/M |
| 3300010299 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA | Environmental | Open in IMG/M |
| 3300010300 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA | Environmental | Open in IMG/M |
| 3300010316 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010354 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA | Environmental | Open in IMG/M |
| 3300010370 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA | Environmental | Open in IMG/M |
| 3300010412 | Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10 | Environmental | Open in IMG/M |
| 3300012920 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG | Environmental | Open in IMG/M |
| 3300013005 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG | Environmental | Open in IMG/M |
| 3300013132 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m | Environmental | Open in IMG/M |
| 3300014720 (restricted) | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m | Environmental | Open in IMG/M |
| 3300017701 | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N | Environmental | Open in IMG/M |
| 3300017716 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D | Environmental | Open in IMG/M |
| 3300017736 | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N | Environmental | Open in IMG/M |
| 3300017761 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N | Environmental | Open in IMG/M |
| 3300017949 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017960 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaG | Environmental | Open in IMG/M |
| 3300017962 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017963 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG | Environmental | Open in IMG/M |
| 3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017968 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017969 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017971 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG | Environmental | Open in IMG/M |
| 3300018039 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018417 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018426 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300019783 | Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N | Environmental | Open in IMG/M |
| 3300020196 | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m | Environmental | Open in IMG/M |
| 3300020200 | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m | Environmental | Open in IMG/M |
| 3300020316 | Marine microbial communities from Tara Oceans - TARA_A100001234 (ERX555946-ERR599134) | Environmental | Open in IMG/M |
| 3300020551 | Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes) | Environmental | Open in IMG/M |
| 3300021354 | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m | Environmental | Open in IMG/M |
| 3300021368 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550 | Environmental | Open in IMG/M |
| 3300021378 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131 | Environmental | Open in IMG/M |
| 3300022068 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2) | Environmental | Open in IMG/M |
| 3300022176 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2) | Environmental | Open in IMG/M |
| 3300022198 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3) | Environmental | Open in IMG/M |
| 3300022200 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3) | Environmental | Open in IMG/M |
| 3300022747 | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG | Environmental | Open in IMG/M |
| 3300023174 | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505 | Environmental | Open in IMG/M |
| 3300024343 | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction | Environmental | Open in IMG/M |
| 3300025057 | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025093 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025120 | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) | Environmental | Open in IMG/M |
| 3300025127 | Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300025151 | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300025585 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025646 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025647 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025655 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025671 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) | Environmental | Open in IMG/M |
| 3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
| 3300025769 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes) | Environmental | Open in IMG/M |
| 3300025815 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025828 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300027314 | Estuarine microbial communities from the Columbia River estuary - metaG 1561A-02 (SPAdes) | Environmental | Open in IMG/M |
| 3300027659 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) | Environmental | Open in IMG/M |
| 3300027770 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027785 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes) | Environmental | Open in IMG/M |
| 3300027851 | Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 (SPAdes) | Environmental | Open in IMG/M |
| 3300027859 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome (SPAdes) | Environmental | Open in IMG/M |
| 3300027973 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300029306 | Marine harbor viral communities from the Indian Ocean - SCH3 | Environmental | Open in IMG/M |
| 3300029345 | Marine harbor viral communities from the Indian Ocean - SCH1 | Environmental | Open in IMG/M |
| 3300031539 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 | Environmental | Open in IMG/M |
| 3300031565 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-2 | Environmental | Open in IMG/M |
| 3300031673 | Soil microbial communities from Risofladan, Vaasa, Finland - TR-3 | Environmental | Open in IMG/M |
| 3300031784 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 | Environmental | Open in IMG/M |
| 3300031952 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 | Environmental | Open in IMG/M |
| 3300032050 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122 | Environmental | Open in IMG/M |
| 3300032092 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121 | Environmental | Open in IMG/M |
| 3300032116 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 | Environmental | Open in IMG/M |
| 3300032177 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0 | Environmental | Open in IMG/M |
| 3300032342 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0 | Environmental | Open in IMG/M |
| 3300034374 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4) | Environmental | Open in IMG/M |
| 3300034418 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGIcombinedJ13530_1095621572 | 3300001213 | Wetland | RAQANKLSGKNKALGICEVCWLIPDEAPKRDDLALQPAGLVESNVYTSTVPS* |
| MLSed_100192401 | 3300001533 | Benthic | GNDKALAICEVCWIVPDEAPERQAVALQPDGLVESSAYTSTTPA* |
| MLSed_100194097 | 3300001533 | Benthic | GNDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA* |
| JGI11772J19994_10049814 | 3300001748 | Saline Water And Sediment | VCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA* |
| GOS2267_1016064 | 3300001934 | Marine | AGAGKLSGKDKALAICEVCWIVADEPPERQDLALQPDGVIESQIYTSTSPS* |
| GOS2229_10029931 | 3300001963 | Marine | KALAICEVCWIVADEPPERQDLALQPDGVIESQIYTSTSPS* |
| Ga0066182_100761322 | 3300004125 | Freshwater Lake | NGRLNGKDKALAICEVCWLVPDSAPERSDLALQPAGVVESSIYTSTVPA* |
| Ga0049080_102912831 | 3300005582 | Freshwater Lentic | RAQAGKLSGKNKALAICEVCWLVPDEAPKRDDLVLQPGGLVESSVYTSTVPA* |
| Ga0074649_10249851 | 3300005613 | Saline Water And Sediment | ANKLSGKDKALAICEVCWIIADEPPERQDVALQPDGVVESQIYTSTSPS* |
| Ga0075474_101211693 | 3300006025 | Aqueous | KALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0070749_105407502 | 3300006802 | Aqueous | DPRAKSGKLIGKDKALAICEVCWLIPDEPPKRSDVALQPAGVVESSIYTSTVPSA* |
| Ga0070749_107796701 | 3300006802 | Aqueous | EVCWLVPDQPPKRSDIVLQPAGIVESSVYTSTSPS* |
| Ga0070754_101775293 | 3300006810 | Aqueous | GAGKLSGKDKALAICEVCWILPDEPPERQDVALQPDGIIESSTYTSTSPA* |
| Ga0070754_103486042 | 3300006810 | Aqueous | RTGGGSLKGKDKALAVCEVCWIVPDAAPKRDDLVLQPGGVVESTVYTSTVPT* |
| Ga0070750_102158261 | 3300006916 | Aqueous | LSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPS* |
| Ga0070746_100623115 | 3300006919 | Aqueous | DPRASAGKLSGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0070746_101941201 | 3300006919 | Aqueous | LSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPA** |
| Ga0070746_104063872 | 3300006919 | Aqueous | ICEVCWIVPDEAPERSDLALQPGGVIESQIYTSTSPS* |
| Ga0075460_102838152 | 3300007234 | Aqueous | LKGKDKALAVCEVCWIVPDAAPKRDDLALQPGGVVESTIYTSTVPS* |
| Ga0070745_12937211 | 3300007344 | Aqueous | KNKALAICEVCWIVPDEPPERQDVALQPGGIVESTAYTSTSPA* |
| Ga0070752_12027611 | 3300007345 | Aqueous | ALGICEVCWLIPDEPPERDDVVLQPGGVVESSIYTSTSPS* |
| Ga0070752_12570611 | 3300007345 | Aqueous | AICEVCWILPDSPPERQDVALQPDGVTESSVYTSTQPR* |
| Ga0070753_10147401 | 3300007346 | Aqueous | PRAGAGKLSGKDKALAICEVCWILPDEPPERQDVALQPDGIIESSTYTSTSPA* |
| Ga0070753_13537512 | 3300007346 | Aqueous | EDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0099851_11562253 | 3300007538 | Aqueous | YDPRAGVGKLSGKDKALALCEVCWLVPDQPPKRSDIVLQPAGIVESSVYTSTSPS* |
| Ga0099849_10922223 | 3300007539 | Aqueous | VGKLIGKNKALAICEVCWIVPDEPPKRDDVVLQPAGLVESSVYTTTTPA* |
| Ga0099849_11608393 | 3300007539 | Aqueous | AGVNKLSGNDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA* |
| Ga0099848_10314711 | 3300007541 | Aqueous | EVCWLVPDEPPKRSDVALQPAGVVESSIYTSTSPSA* |
| Ga0099848_11558613 | 3300007541 | Aqueous | LALCEVCWLIPDEPPKRDDVALQPGGVVESSIYTSTSPS* |
| Ga0099848_11800172 | 3300007541 | Aqueous | QAGKLSGKDKALAICELCWIVPDAPPKRDDVVLQPGGVVESTIYTSTVPS* |
| Ga0099846_10346421 | 3300007542 | Aqueous | DKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVPS* |
| Ga0099846_10805201 | 3300007542 | Aqueous | KLSGEDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA* |
| Ga0099846_11245233 | 3300007542 | Aqueous | DKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVPT* |
| Ga0099846_12176723 | 3300007542 | Aqueous | AGAGKLSGKDKALAICEVCWIIPDEPPERQDVALQPDGLVESSTYTSTSPS* |
| Ga0070751_12597932 | 3300007640 | Aqueous | YDPRASAGKLSGEDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0070751_12981372 | 3300007640 | Aqueous | GEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0099850_11025514 | 3300007960 | Aqueous | SGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS* |
| Ga0102922_10006931 | 3300008021 | Estuarine | KALAICEVCWLVPDEPPKRSDVTLQPAGVVESSIYTSTVPSA* |
| Ga0115026_109157191 | 3300009111 | Wetland | DKALAICEVCWLVPDAPPERSDLALQPAGIIESSVYTSTVPS* |
| Ga0114980_100069401 | 3300009152 | Freshwater Lake | GRLSGKNKALAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA* |
| Ga0114979_101090971 | 3300009180 | Freshwater Lake | LAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA* |
| Ga0114976_104499281 | 3300009184 | Freshwater Lake | ICEVCWFLADEAPGRDDLALQPAGLIESNVYTSTVPS* |
| Ga0115011_116210402 | 3300009593 | Marine | GDEKALAICEVCWILPDSPPERQDVALQPDGVTESSVYTSTQPN* |
| Ga0129345_12978952 | 3300010297 | Freshwater To Marine Saline Gradient | LAICEVCWIVPDEPPERQDVALQPDGLIESSTYTSTSPA* |
| Ga0129342_12752232 | 3300010299 | Freshwater To Marine Saline Gradient | IGKNKALAICEVCWIVPDEPPKRDDVVLQPAGLVESSVYTTTTPA* |
| Ga0129351_13128412 | 3300010300 | Freshwater To Marine Saline Gradient | YDPRASAGKLSGEDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPA* |
| Ga0136655_11676603 | 3300010316 | Freshwater To Marine Saline Gradient | DKALAICEVCWIIPDEPPERQDVALQPDGLVESSTYTSTSPS* |
| Ga0129333_109700301 | 3300010354 | Freshwater To Marine Saline Gradient | AQANKLAGKNKALGICEVCWLIPDEAPKRDDLALQPAGLVESNVYTSTVPA* |
| Ga0129336_101870394 | 3300010370 | Freshwater To Marine Saline Gradient | CEVCWLVPDAAPERSDLALQPAGVVESSIYTSTVPA* |
| Ga0129336_104454651 | 3300010370 | Freshwater To Marine Saline Gradient | KDKALAICEVCWLVPDAPPERSDLALQPAGIIESSVYTSTVPS* |
| Ga0136852_114030862 | 3300010412 | Mangrove Sediment | VCWLIPDEPPERDDVVLQPGGVVESSIYTSTSPS* |
| Ga0160423_106183183 | 3300012920 | Surface Seawater | VNKLAGDDKALAICEVCWIIPDEPPERQDVALQPDGVVESQIYTSTSPS* |
| Ga0164292_109330401 | 3300013005 | Freshwater | GKNKALAICEVCWLVPDEAPKRDDLALQPGGLVESSVYTSTVPA* |
| (restricted) Ga0172372_106475131 | 3300013132 | Freshwater | QSGKLAGKNKALGICEVCWIVPDEAPKRDDLALQPGGLVESSVYTSTVPV* |
| (restricted) Ga0172376_105208371 | 3300014720 | Freshwater | GKNKALGICEVCWIVPDEAPKRDDLALQPGGLVESSVYTSTVPV* |
| Ga0181364_10150091 | 3300017701 | Freshwater Lake | KNKALGICEICWFLSDEAANRDDLALQPVGIVESNVFTSTVPS |
| Ga0181350_10449833 | 3300017716 | Freshwater Lake | LGICEICWFLSDEAANRDDLALQPAGIVESNVFTSTVPS |
| Ga0181365_10126181 | 3300017736 | Freshwater Lake | RLSGKNKALGICEVCWMVADEAPQRDDIVLQPAGVVESSIYTSTVPA |
| Ga0181356_10254681 | 3300017761 | Freshwater Lake | RAGSNRLSGKNKALGICEVCWMVADEAPQRDDIVLQPAGVVESSIYTSTVPA |
| Ga0181584_103533553 | 3300017949 | Salt Marsh | SGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0180429_106881912 | 3300017960 | Hypersaline Lake Sediment | LSGNDKALAICEVCWIVPDEAPERQAVALQPDGLVESSAYTSTTPA |
| Ga0181581_105480461 | 3300017962 | Salt Marsh | ICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0180437_105663991 | 3300017963 | Hypersaline Lake Sediment | KALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTSPQ |
| Ga0181590_107033581 | 3300017967 | Salt Marsh | EVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0181587_106534081 | 3300017968 | Salt Marsh | GKDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0181585_101268961 | 3300017969 | Salt Marsh | AGKLSGEDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0180438_104488453 | 3300017971 | Hypersaline Lake Sediment | GNDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTSPQ |
| Ga0180438_108051531 | 3300017971 | Hypersaline Lake Sediment | LSGDDKALAICEVCWIIPDEPPERQDVALQPDGLVESSTYTSTSPS |
| Ga0181579_104153672 | 3300018039 | Salt Marsh | GKLSGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0181558_107280121 | 3300018417 | Salt Marsh | NELSGKNKALAICEVCWLIPDQPPKRDDLVLQPGGVIESSIYTSTTPSA |
| Ga0181566_104444241 | 3300018426 | Salt Marsh | YDPRANANKLSGKDKALGICEVCWLIADEPPERDDVVLQPGGVVESSIYTSTSPS |
| Ga0181361_1025161 | 3300019783 | Freshwater Lake | NNQLRGKNKALGICEICWFLSDEAANRDDLALQPAGIVESNVFTSTVPS |
| Ga0194124_100429271 | 3300020196 | Freshwater Lake | AICEVCWLVPDQAPERSDLALQPAGVVESSIYTSTVPS |
| Ga0194121_101111141 | 3300020200 | Freshwater Lake | YDPRAQANKLSGKNKALGICEVCWLIPDEAPKRDDLALQPGGVVESNVYTSTVPS |
| Ga0211487_11033621 | 3300020316 | Marine | DKALAICEVCWIIPDEPPERQDVALQPDGLIESSTYTSTSPS |
| Ga0208360_10111483 | 3300020551 | Freshwater | AANKLAGKNKALGIAEVCWLLPDEAPKRDDLALQPAGLIESNVYTSTVPSX |
| Ga0194047_103563181 | 3300021354 | Anoxic Zone Freshwater | ALAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA |
| Ga0213860_102991901 | 3300021368 | Seawater | LALCEVCWLVPDQPPKRSDIVLQPAGIVESSVYTSTSPS |
| Ga0213861_101657091 | 3300021378 | Seawater | DKALAICEVCWIIPDEPPERQDVALQPDGLVESSTYTSTSPS |
| Ga0212021_11073982 | 3300022068 | Aqueous | LAVCEVCWIVPDAAPKRDDLVLQPGGVVESTVYTSTVPS |
| Ga0212031_10866022 | 3300022176 | Aqueous | AGAGKLSGKNKALAICEVCWIVPDEPPERQDVALQPGGIVESTAYTSTSPA |
| Ga0196905_11340601 | 3300022198 | Aqueous | AICEVCWIVADEPPERSDLALQPAGLIESQVYTSTSPS |
| Ga0196905_11377082 | 3300022198 | Aqueous | LAVCEVCWIVPDEPPERQDLALQPGGIIESSVYTSTSPS |
| Ga0196901_10570361 | 3300022200 | Aqueous | KGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSIVPS |
| Ga0196901_11224621 | 3300022200 | Aqueous | LSGNNKALAICELCWIVPDAPPKRDDVVLQPGGVVESTIYTSTVPS |
| Ga0196901_12346142 | 3300022200 | Aqueous | YDPRASAGKLSGEDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPA |
| Ga0228703_10964861 | 3300022747 | Freshwater | DPRAQAGKLAGKNKALAICEVCWIIPDEAPKRDDLVLQPGGLVESSVYTSTVPS |
| Ga0214921_101410164 | 3300023174 | Freshwater | VRSSAANGRLSGKNKALAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA |
| Ga0244777_100009891 | 3300024343 | Estuarine | KLIGKDKALAICEVCWLVPDEPPKRSDVTLQPAGVVESSIYTSTVPSA |
| Ga0208018_1079864 | 3300025057 | Marine | YDPRAGVGKLSGKDKALALCEVCWLVPDQPPKRSDIVLQPAGIVESSVYTSTSPS |
| Ga0208794_10036031 | 3300025093 | Marine | DPRAGVNKLSGNDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA |
| Ga0209535_12019432 | 3300025120 | Marine | DPRAGVNKLAGDNKALAICEVCWVIPDEPPERQAVALQPDGVVESQIYSSTSPS |
| Ga0209348_10075797 | 3300025127 | Marine | LSGDDKALAICEVCWIIPDEPPERQDLALQPDGIVESSTYTSTSPA |
| Ga0209645_10107556 | 3300025151 | Marine | DDKALAICEVCWIIPDEPPERQDLALQPDGIVESSTYTSTSPA |
| Ga0208546_11205781 | 3300025585 | Aqueous | SGKDKALAICEVCWLIPDNPPERSDLALQPAGIVESNVYTSTVPS |
| Ga0208161_10269181 | 3300025646 | Aqueous | EVCWLVPDEPPKRSDVALQPAGVVESSIYTSTSPSA |
| Ga0208160_10279664 | 3300025647 | Aqueous | KDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVPS |
| Ga0208160_10323811 | 3300025647 | Aqueous | EVCWIVPDEPPERQDLALQPGGIIESSVYTSTSPS |
| Ga0208795_10529234 | 3300025655 | Aqueous | ALAICEVCWIVPDAPPERQDLALQPGGVIESSIYTSTSPS |
| Ga0208795_11056131 | 3300025655 | Aqueous | AVGKDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0208898_10055681 | 3300025671 | Aqueous | KLSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPA |
| Ga0208898_10141696 | 3300025671 | Aqueous | AGKLSGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0208898_11052992 | 3300025671 | Aqueous | KLSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPS |
| Ga0208899_10552714 | 3300025759 | Aqueous | LSGDDKALAICEVCWIVPDEPPERQDVALQPDGVIESSIYTSTSPS |
| Ga0208899_11171551 | 3300025759 | Aqueous | ASAGKLSGEDKALAICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPA |
| Ga0208767_12216702 | 3300025769 | Aqueous | VCEVCWIVPDAAPKRDDLALQPGGVVESSVFTSTVPS |
| Ga0208785_11146501 | 3300025815 | Aqueous | GVGSLKGKDKALAVCEVCWIVPDAAPKRDDLALQPGGVVESTVYTSTVPS |
| Ga0208547_11614261 | 3300025828 | Aqueous | VYDPRAAAGKLSGEDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPA |
| Ga0208644_12226203 | 3300025889 | Aqueous | GGKLAGEDKALAICEVCWIVPDEAPERSDLALQPGGVIESQIYTSTSPS |
| Ga0208811_10605802 | 3300027314 | Estuarine | LIGKDKALAICEVCWLVPDEPPKRSDVTLQPAGVVESSIYTSTVPSA |
| Ga0208975_10821843 | 3300027659 | Freshwater Lentic | KLSGKNKALAICEVCWLVPDEAPKRDDLVLQPAGLVESSTYTSTVPS |
| Ga0209086_100941541 | 3300027770 | Freshwater Lake | TNNQLRGKNKALGICEVCWFLSDDAPSREDMVLQPAGIVESNVYTSTVPS |
| Ga0209246_100962141 | 3300027785 | Freshwater Lake | GICEICWFLSDEAANRDDLALQPAGIVESNVFTSTVPS |
| Ga0209066_100665215 | 3300027851 | Watersheds | GAGKLSGKNKALAICEVCWIVADAPPERSDLALQPAGVIESSIYTSTSPS |
| Ga0209503_101233831 | 3300027859 | Marine | GDNKSLAICEVCWLLPDSPPERQDLALQPDGLTESAVYTRTSPQ |
| Ga0209298_1000509711 | 3300027973 | Freshwater Lake | RAANGRLSGKNKALAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA |
| Ga0135212_10371381 | 3300029306 | Marine Harbor | FPSHDPRATAGKLSGSDKALAICEVCWIVPDEPPERQDVALQPDGVIESQIYTSTSPS |
| Ga0135210_10092291 | 3300029345 | Marine Harbor | FPSHDPRASAGKLSGEDKSLAICEVCWIVPDEAPERQDVALQPDGVIESQIYTSTSPS |
| Ga0307380_101587371 | 3300031539 | Soil | CEVCWIVPDAAPKRDDLVLQPGGVVESTVYTSTVPS |
| Ga0307380_102636311 | 3300031539 | Soil | AGKLSGKDKALAICEVCWIVPDEPPERQDVALQPDGLIESSVYTSTSPS |
| Ga0307379_101718495 | 3300031565 | Soil | DPRAGVGSLKGKDKALAVCEVCWIVPDAAPKRDDLVLQPGGVVESTVYTSTVPS |
| Ga0307377_111409951 | 3300031673 | Soil | AGKLSGKDKALAICEVCWIVADEPPERQDLALQPDGVVESQIYTSTSPS |
| Ga0315899_114656711 | 3300031784 | Freshwater | LAICEVCWIVPDTAPKRDDLALQPGGVVESTVYTSTTPQ |
| Ga0315294_104444763 | 3300031952 | Sediment | GKNKALGICEICWFLSDEAANRDDLALQPAGIVESNVFTSTVPS |
| Ga0315906_111219222 | 3300032050 | Freshwater | LAGNNKALAICEVCWIVPDVAPKRDDVALQPGGVVESSVFTSTVPS |
| Ga0315905_102940814 | 3300032092 | Freshwater | AQASGVFDPRATNNQLRGKNKALGICEICWFLSDEAANRDDLALQPAGIVESNVFTSTVP |
| Ga0315903_100279339 | 3300032116 | Freshwater | PRAGVGSLKGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVPA |
| Ga0315276_100399201 | 3300032177 | Sediment | IYDPRAAANSLAGSNKALAICEVCWIVPDAAPERDDLALQPGGVTESSIYTSTSPQ |
| Ga0315286_116471301 | 3300032342 | Sediment | GKNKALAICEVCWIVADQPPERSDLALQPAGVIESSIYTSTSPS |
| Ga0348335_157173_1_123 | 3300034374 | Aqueous | ALAVCEVCWIVPDAAPKRDDLVLQPGGVVESTVYTSTVPT |
| Ga0348337_012621_2_118 | 3300034418 | Aqueous | AICEVCWIVADEPPERQDVALQPDGVIESQIYTSTSPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |